Sequence Description Alias PCC hrr AMTR_s00015p00257490 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein evm_27.TU.AmTr_v1.0_scaffold00015.112 0.9569640975140488 1 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.9542532782541152 2 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.9382233631268283 3 AMTR_s00003p00270950 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR9 evm_27.TU.AmTr_v1.0_scaffold00003.446 0.9342583650707069 4 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component evm_27.TU.AmTr_v1.0_scaffold00013.7 0.928643209530015 5 AMTR_s00024p00220830 evm_27.TU.AmTr_v1.0_scaffold00024.217 0.9258626689648335 6 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.9234815637043383 16 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.9196307654591093 8 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.9189548124128971 10 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.916858189547065 29 AMTR_s00154p00066950 evm_27.TU.AmTr_v1.0_scaffold00154.45 0.916802867292673 11 AMTR_s00095p00128730 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component evm_27.TU.AmTr_v1.0_scaffold00095.88 0.9165888812408317 28 AMTR_s00013p00241300 evm_27.TU.AmTr_v1.0_scaffold00013.201 0.9159186660248065 13 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9136920185757276 55 AMTR_s00019p00227810 ACT domain-containing protein ACR11 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.297 0.9125169618449466 15 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.9118205212517907 45 AMTR_s00062p00065360 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LCNP NPQ-regulator lipocalin evm_27.TU.AmTr_v1.0_scaffold00062.38 0.9111954582774779 17 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9087864285433318 69 AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 evm_27.TU.AmTr_v1.0_scaffold00004.63 0.9071237268401788 37 AMTR_s00039p00213540 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psPSRP5 component evm_27.TU.AmTr_v1.0_scaffold00039.184 0.9027620170017785 20 AMTR_s00059p00208110 Photosynthesis.photophosphorylation.cytochrome b6/f complex.component PetM/VII evm_27.TU.AmTr_v1.0_scaffold00059.240 0.9027127039664904 21 AMTR_s00044p00032580 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component evm_27.TU.AmTr_v1.0_scaffold00044.9 0.9017977328697193 39 AMTR_s00069p00149060 evm_27.TU.AmTr_v1.0_scaffold00069.116 0.8987616952980559 23 AMTR_s00030p00229140 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) evm_27.TU.AmTr_v1.0_scaffold00030.180 0.8960153071124137 24 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.8934155110105336 41 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.8930614635498615 66 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.8925932496404402 82 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.8924743166028677 54 AMTR_s00016p00074040 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component evm_27.TU.AmTr_v1.0_scaffold00016.38 0.8903944327980018 49 AMTR_s00067p00038470 evm_27.TU.AmTr_v1.0_scaffold00067.21 0.8900916801064169 32 AMTR_s00010p00259680 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00010.427 0.8892443359522522 31 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.8871115023831057 45 AMTR_s00092p00149880 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.118 0.8863369326328533 37 AMTR_s00048p00222810 evm_27.TU.AmTr_v1.0_scaffold00048.208 0.8849077177891886 37 AMTR_s00104p00092530 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.35 0.8840850978630669 53 AMTR_s00061p00142700 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00061.123 0.8825030887959776 48 AMTR_s00008p00202090 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.120 0.881953165412835 62 AMTR_s00012p00077460 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum evm_27.TU.AmTr_v1.0_scaffold00012.34 0.8815937258821958 39 AMTR_s00019p00242730 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00019.360 0.8814046827765827 40 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.8813689221548936 83 AMTR_s00075p00091010 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00075.28 0.87969708418483 63 AMTR_s00029p00083110 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein evm_27.TU.AmTr_v1.0_scaffold00029.76 0.8795072240946235 45 AMTR_s00117p00058770 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.VDE violaxanthin de-epoxidase evm_27.TU.AmTr_v1.0_scaffold00117.15 0.8790347267636288 68 AMTR_s00006p00260630 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease evm_27.TU.AmTr_v1.0_scaffold00006.223 0.878771239845265 48 AMTR_s00009p00268600 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.protochlorophyllide oxidoreductase (POR) activities.light-dependent POR evm_27.TU.AmTr_v1.0_scaffold00009.428 0.8787171644948586 49 AMTR_s00012p00251230 evm_27.TU.AmTr_v1.0_scaffold00012.252 0.8784727708440117 50 AMTR_s00149p00067630 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00149.44 0.8754287774025776 53 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8752384351997248 74 AMTR_s00092p00162140 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbR evm_27.TU.AmTr_v1.0_scaffold00092.138 0.8752146935347468 56 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.8748468419884838 66 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.8737814894405709 85 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.8730579566029749 68 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8729748323802731 64 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00203.3 0.8712153547520091 63 AMTR_s00065p00020910 Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.6 0.8708446630137937 64 AMTR_s00109p00146830 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB3/NDF4 component evm_27.TU.AmTr_v1.0_scaffold00109.159 0.8708386999124127 65 AMTR_s00140p00103640 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL9 component evm_27.TU.AmTr_v1.0_scaffold00140.50 0.8706326923865123 66 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.8699098028814113 99 AMTR_s00175p00056960 Solute transport.carrier-mediated transport.APC superfamily.HAAAP-type aromatic amino acid transporter evm_27.TU.AmTr_v1.0_scaffold00175.29 0.8698920376516329 68 AMTR_s00057p00165960 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase evm_27.TU.AmTr_v1.0_scaffold00057.167 0.868768639314471 70 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) evm_27.TU.AmTr_v1.0_scaffold00010.104 0.868067128301403 83 AMTR_s00010p00265920 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB4/NDF6 component evm_27.TU.AmTr_v1.0_scaffold00010.515 0.8657723647411071 93 AMTR_s00038p00170150 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL29 component evm_27.TU.AmTr_v1.0_scaffold00038.109 0.8639908963380354 76 AMTR_s00101p00121540 PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.95 0.8631166847455997 91 AMTR_s00007p00259840 evm_27.TU.AmTr_v1.0_scaffold00007.320 0.8587369096102817 85 AMTR_s00048p00192820 evm_27.TU.AmTr_v1.0_scaffold00048.152 0.8584473704310854 86 AMTR_s00025p00231300 evm_27.TU.AmTr_v1.0_scaffold00025.336 0.8578881788007615 88 AMTR_s00147p00104660 evm_27.TU.AmTr_v1.0_scaffold00147.61 0.8567320841741567 90 AMTR_s00078p00106750 Phytohormones.salicylic acid.synthesis.isochorismate synthase evm_27.TU.AmTr_v1.0_scaffold00078.78 0.8557407579728735 91 AMTR_s00100p00087410 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris evm_27.TU.AmTr_v1.0_scaffold00100.26 0.8554199031549224 93 AMTR_s00001p00117690 evm_27.TU.AmTr_v1.0_scaffold00001.86 0.8547332361627917 94 AMTR_s00127p00060060 RNA biosynthesis.transcriptional activation.MADS box transcription factor evm_27.TU.AmTr_v1.0_scaffold00127.17 0.8533112083614496 100