Sequence Description Alias PCC hrr Cpa|evm.model.tig00000254.94 0.9664064798091674 3 Cpa|evm.model.tig00001085.21 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana 0.9602995415095786 2 Cpa|evm.model.tig00020557.25 0.9595973242175698 9 Cpa|evm.model.tig00001215.19 0.9576355907647439 4 Cpa|evm.model.tig00000551.6 0.9511347546507144 5 Cpa|evm.model.tig00020723.64 0.9435359441336255 16 Cpa|evm.model.tig00001085.20 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana 0.9429646924683888 7 Cpa|evm.model.tig00000057.44 0.9428345457760398 11 Cpa|evm.model.tig00020553.190 ABC transporter C family member 4 OS=Arabidopsis thaliana 0.9416484640766711 18 Cpa|evm.model.tig00021374.35 0.9408522888757205 13 Cpa|evm.model.tig00000204.80 Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana 0.9405611014069275 17 Cpa|evm.model.tig00000912.32 Protein degradation.peptidase families.serine-type peptidase activities.LON protease 0.9375524717049547 12 Cpa|evm.model.tig00022075.74 0.936635038562807 13 Cpa|evm.model.tig00020539.39 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.9364491396476018 14 Cpa|evm.model.tig00000949.24 0.9363696597952557 23 Cpa|evm.model.tig00000492.83 0.9359907940540969 16 Cpa|evm.model.tig00000655.47 0.9356371252928473 24 Cpa|evm.model.tig00000955.24 0.9345335195682183 33 Cpa|evm.model.tig00001302.9 0.9341981425145872 27 Cpa|evm.model.tig00001657.7 0.9339016657407575 24 Cpa|evm.model.tig00021616.13 0.9318852538578951 21 Cpa|evm.model.tig00000796.24 0.9271848675566732 22 Cpa|evm.model.tig00020603.30 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana 0.9262848267367768 23 Cpa|evm.model.tig00000241.114 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase 0.9259966874674502 24 Cpa|evm.model.tig00021721.8 0.9258312599624727 41 Cpa|evm.model.tig00001126.7 0.9256731234824042 41 Cpa|evm.model.tig00000344.14 0.9245318777098309 27 Cpa|evm.model.tig00000663.54 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease 0.9228857063524659 49 Cpa|evm.model.tig00001487.8 0.9216748361736262 29 Cpa|evm.model.tig00000806.35 0.9210080135873463 30 Cpa|evm.model.tig00000093.105 Protein degradation.peptidase families.serine-type peptidase activities.LON protease 0.9205983001360845 50 Cpa|evm.model.tig00000821.30 0.9198965980267665 48 Cpa|evm.model.tig00000169.34 Peptide methionine sulfoxide reductase B5 OS=Arabidopsis thaliana 0.9190815786234574 33 Cpa|evm.model.tig00020938.9 Protein ACTIVITY OF BC1 COMPLEX KINASE 1, chloroplastic OS=Arabidopsis thaliana 0.9186980208985509 34 Cpa|evm.model.tig00021537.1 Puromycin-sensitive aminopeptidase OS=Arabidopsis thaliana 0.9184986076988187 35 Cpa|evm.model.tig00020563.171 Protein degradation.peptidase families.metallopeptidase activities.M48 families.PGM48 zinc metalloprotease 0.9178885549076249 36 Cpa|evm.model.tig00000367.31 0.9177664807173108 37 Cpa|evm.model.tig00021441.9 0.9170590254494652 38 Cpa|evm.model.tig00000378.18 0.916301577099769 47 Cpa|evm.model.tig00000455.54 0.9156691564909168 40 Cpa|evm.model.tig00020961.57 Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana 0.9141235608033894 41 Cpa|evm.model.tig00000215.61 0.913333677950094 42 Cpa|evm.model.tig00000823.29 DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana 0.909951432946138 43 Cpa|evm.model.tig00020951.45 0.9097806955999412 44 Cpa|evm.model.tig00001368.15 ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana 0.9074851899575886 45 Cpa|evm.model.tig00021127.131 0.9072399812960903 63 Cpa|evm.model.tig00000691.29 0.9066679349368559 47 Cpa|evm.model.tig00000350.14 0.9065826048080243 48 Cpa|evm.model.tig00001155.24 Protein NCA1 OS=Arabidopsis thaliana 0.9049241108482042 51 Cpa|evm.model.tig00001071.14 Carotenoid 9,10(9,10)-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar 0.9044811579243376 59 Cpa|evm.model.tig00000681.17 Protein TIC 55, chloroplastic OS=Arabidopsis thaliana 0.9020962010534074 59 Cpa|evm.model.tig00000402.46 0.9009927531367828 52 Cpa|evm.model.tig00000949.8 0.900343303298874 53 Cpa|evm.model.tig00000640.27 0.8992822929299441 54 Cpa|evm.model.tig00001339.10 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic OS=Arabidopsis thaliana 0.8983561149269892 78 Cpa|evm.model.tig00001374.9 0.8979741573718468 56 Cpa|evm.model.tig00020553.74 0.8976811535572823 57 Cpa|evm.model.tig00020952.44 DNA damage response.DNA repair mechanisms.photoreactivation.class II photolyase (PHR1) 0.8968945744990224 64 Cpa|evm.model.tig00020964.16 Peptide methionine sulfoxide reductase OS=Lactuca sativa 0.8959181157302311 59 Cpa|evm.model.tig00000367.32 0.8958293200566183 60 Cpa|evm.model.tig00021035.24 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana 0.8942097797392303 74 Cpa|evm.model.tig00020675.83 Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana 0.893519831978402 62 Cpa|evm.model.tig00000204.30 0.8927248450638935 63 Cpa|evm.model.tig00020660.19 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8926249539232636 64 Cpa|evm.model.tig00000459.54 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8922690675901789 65 Cpa|evm.model.tig00020965.69 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum 0.8916766134507454 66 Cpa|evm.model.tig00021537.37 0.8915179981589268 67 Cpa|evm.model.tig00021135.25 0.8913620366884824 68 Cpa|evm.model.tig00021254.26 0.8901945239249246 69 Cpa|evm.model.tig00020830.39 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic OS=Arabidopsis thaliana 0.8890321587823509 70 Cpa|evm.model.tig00000507.23 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii 0.8889155626507578 71 Cpa|evm.model.tig00001086.15 0.8888491987913547 72 Cpa|evm.model.tig00021493.41 0.8876020992549488 73 Cpa|evm.model.tig00001278.14 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiamine diphosphokinase 0.886184460678684 74 Cpa|evm.model.tig00020553.191 ABC transporter C family member 11 OS=Arabidopsis thaliana 0.8861299108611822 75 Cpa|evm.model.tig00021494.27 0.8848446441717254 76 Cpa|evm.model.tig00001310.4 0.8845369249211168 77 Cpa|evm.model.tig00000241.155 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor 0.8837543082973888 78 Cpa|evm.model.tig00000940.9 0.8833989061318377 79 Cpa|evm.model.tig00021489.14 Sanguinarine reductase OS=Eschscholzia californica 0.8826616450525698 80 Cpa|evm.model.tig00000404.56 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8823963115249676 81 Cpa|evm.model.tig00020710.126 0.8823080789044316 82 Cpa|evm.model.tig00021038.81 Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana 0.8816925928677096 83 Cpa|evm.model.tig00000190.38 0.8798868023671461 84 Cpa|evm.model.tig00000248.71 0.8788518134313353 85 Cpa|evm.model.tig00021435.52 0.8751548288910661 86 Cpa|evm.model.tig00000093.172 0.8748185544287244 87 Cpa|evm.model.tig00021312.29 0.874808470985603 88 Cpa|evm.model.tig00000215.56 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana 0.8742606967263015 89 Cpa|evm.model.tig00000586.13 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 0.8718002107444146 91 Cpa|evm.model.tig00021135.14 0.8717459223957407 92 Cpa|evm.model.tig00020554.147 0.8713898270478769 93 Cpa|evm.model.tig00000079.6 0.8713887723525913 94 Cpa|evm.model.tig00000310.32 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 0.8713765015646658 95 Cpa|evm.model.tig00000411.40 Solute transport.carrier-mediated transport.MC-type solute transporter 0.8712422913778506 96 Cpa|evm.model.tig00020965.70 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum 0.8709521179846982 97 Cpa|evm.model.tig00020553.186 0.8700795102291832 98 Cpa|evm.model.tig00000144.84 0.8694479516257694 99 Cpa|evm.model.tig00001490.9 0.8687429090644955 100