Sequence Description Alias PCC hrr Cpa|evm.model.tig00001049.12 0.9424732026942005 1 Cpa|evm.model.tig00000829.9 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN10 regulatory component 0.9291251935750683 6 Cpa|evm.model.tig00021348.94 0.9286087930063524 4 Cpa|evm.model.tig00020780.6 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO activating E1 complex.small component (SAE1) 0.9266108422688609 4 Cpa|evm.model.tig00000718.6 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT4 regulatory component 0.9242713724364688 16 Cpa|evm.model.tig00000350.27 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.alpha subunit 0.9231594793815113 6 Cpa|evm.model.tig00020553.161 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-rhamnose synthesis.UDP-L-rhamnose synthase 0.9207963926440758 34 Cpa|evm.model.tig00000402.41 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B1 component 0.9206616520306626 8 Cpa|evm.model.tig00001107.11 Secondary metabolism.terpenoids.terpenoid synthesis.cycloartenol synthesis.squalene synthase 0.919319221252257 10 Cpa|evm.model.tig00020848.67 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.zeta subunit 0.9191951315655164 20 Cpa|evm.model.tig00020553.163 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-13 motor protein 0.9189149398223547 11 Cpa|evm.model.tig00000912.27 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase 0.9185833537862411 14 Cpa|evm.model.tig00000350.15 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.MRE11 component 0.9116646177554786 13 Cpa|evm.model.tig00021357.9 0.9113813816873916 14 Cpa|evm.model.tig00000217.33 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1G large gamma subunit 0.9103745184863662 15 Cpa|evm.model.tig00001107.12 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF31 snRNP component 0.9094247190389653 30 Cpa|evm.model.tig00000789.37 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT6 zeta subunit 0.9088084975257513 17 Cpa|evm.model.tig00022075.46 26S proteasome regulatory subunit 6B homolog OS=Arabidopsis thaliana 0.9087108411487691 20 Cpa|evm.model.tig00021123.42 0.9083313352439629 19 Cpa|evm.model.tig00021612.44 0.9080234901870144 27 Cpa|evm.model.tig00001339.5 Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-6 component 0.9079883067265009 21 Cpa|evm.model.tig00000704.30 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 3 0.9061140957835575 22 Cpa|evm.model.tig00021319.38 Protein modification.peptide maturation.endomembrane system.SPP signal peptidase 0.9042823278888101 23 Cpa|evm.model.tig00000863.17 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana 0.9040765090270866 60 Cpa|evm.model.tig00020703.10 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component 0.9035520440390692 25 Cpa|evm.model.tig00000350.28 Chromatin organisation.chromatin remodeling complexes.RVB helicase component 0.9020927586940167 31 Cpa|evm.model.tig00000704.63 0.9020479573859967 27 Cpa|evm.model.tig00000217.28 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.A-type scaffold component 0.9016869460045149 46 Cpa|evm.model.tig00001187.20 26S proteasome regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica 0.9008213257835054 29 Cpa|evm.model.tig00020703.9 26S proteasome non-ATPase regulatory subunit 2 homolog A OS=Arabidopsis thaliana 0.9006799749886311 30 Cpa|evm.model.tig00000615.75 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN7 regulatory component 0.9005760525134521 31 Cpa|evm.model.tig00021589.1 0.9002104667357523 41 Cpa|evm.model.tig00021464.27 0.899386976263266 33 Cpa|evm.model.tig00000829.17 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.trafficking regulation.ERD2 K/HDEL-signature receptor 0.8953074263009222 34 Cpa|evm.model.tig00000989.12 Phytohormones.cytokinin.perception and signal transduction.AHP-type signal transducer 0.8941302415279905 35 Cpa|evm.model.tig00020918.9 0.8932822305917941 43 Cpa|evm.model.tig00020554.157 Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana 0.8926243380294903 37 Cpa|evm.model.tig00020614.104 Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG3 ATG8-conjugation E2 protein 0.8925323318684695 38 Cpa|evm.model.tig00000792.28 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT6 regulatory component 0.8913796897751863 40 Cpa|evm.model.tig00001206.20 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qa-type SNARE components.SYP4-group protein 0.8908034435606028 40 Cpa|evm.model.tig00000829.3 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component 0.8906482979990601 41 Cpa|evm.model.tig00001093.6 Synaptotagmin-5 OS=Arabidopsis thaliana 0.8902303281350877 42 Cpa|evm.model.tig00000912.18 0.8900862373564702 43 Cpa|evm.model.tig00020918.12 Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana 0.889432677202169 72 Cpa|evm.model.tig00000144.166 Actin-related protein 5 OS=Arabidopsis thaliana 0.888237126001635 66 Cpa|evm.model.tig00000912.8 Dynein assembly factor 3, axonemal homolog OS=Chlamydomonas reinhardtii 0.8877394178000717 81 Cpa|evm.model.tig00000076.86 0.887338253468704 47 Cpa|evm.model.tig00000203.29 0.8868126497040927 48 Cpa|evm.model.tig00000076.105 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.8867642941992162 49 Cpa|evm.model.tig00000478.39 0.8853634832715814 50 Cpa|evm.model.tig00001042.6 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT2 regulatory component 0.8839499653005789 52 Cpa|evm.model.tig00020903.30 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT2 beta subunit 0.883705097818395 52 Cpa|evm.model.tig00021319.34 0.883023198875118 53 Cpa|evm.model.tig00000802.47 26S proteasome non-ATPase regulatory subunit 13 homolog B OS=Arabidopsis thaliana 0.8809728616348446 54 Cpa|evm.model.tig00020685.15 0.8800353576375849 55 Cpa|evm.model.tig00021464.26 0.8774229192734139 56 Cpa|evm.model.tig00000241.37 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 4 0.8771197055608673 57 Cpa|evm.model.tig00001107.3 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase 0.8765254743184846 58 Cpa|evm.model.tig00000319.31 RNA processing.RNA modification.tRNA N6-threonylcarbamoylation.KEOPS/EKC complex.CGI121 component 0.8764996877087687 59 Cpa|evm.model.tig00021464.16 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT1 regulatory component 0.8763666687727039 60 Cpa|evm.model.tig00000194.23 0.8762103751896136 61 Cpa|evm.model.tig00001234.10 Protein modification.phosphorylation.CMGC kinase superfamily.MAPK kinase 0.8755190098076592 75 Cpa|evm.model.tig00000203.32 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP remodeling.DBP5/LOS4 ATP-dependent helicase 0.875111625892728 63 Cpa|evm.model.tig00000842.2 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana 0.8750906174100579 88 Cpa|evm.model.tig00000842.8 0.8744171343544239 65 Cpa|evm.model.tig00020903.27 Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana 0.8742805349621802 92 Cpa|evm.model.tig00020848.76 0.8737604565495073 75 Cpa|evm.model.tig00021357.13 0.8733525263901668 68 Cpa|evm.model.tig00000792.7 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB ligase E3 activities.RUB ligase E3 protein (RBX1) 0.8732364831341656 69 Cpa|evm.model.tig00000042.6 0.8723316476722943 71 Cpa|evm.model.tig00000863.11 Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica 0.8714987583452688 72 Cpa|evm.model.tig00000704.40 0.8712271254435926 84 Cpa|evm.model.tig00021612.50 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC4 component 0.8701263152717662 74 Cpa|evm.model.tig00021234.15 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.middle module.MED7 component 0.8694928665946939 75 Cpa|evm.model.tig00020554.139 Cell cycle.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.TANMEI checkpoint protein 0.8688958555752014 97 Cpa|evm.model.tig00021127.124 0.8678900644718313 77 Cpa|evm.model.tig00020629.95 Ubiquitin-conjugating enzyme E2 35 OS=Arabidopsis thaliana 0.8670993877765544 81 Cpa|evm.model.tig00000704.54 Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana 0.8669249560129516 82 Cpa|evm.model.tig00020554.15 0.8660579168619379 83 Cpa|evm.model.tig00020918.7 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease 0.8647009322451861 86 Cpa|evm.model.tig00001408.10 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.D-class RAB GTPase 0.8645227922867654 87 Cpa|evm.model.tig00020554.138 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component 0.8638126407645434 88 Cpa|evm.model.tig00001229.15 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydratase (ADT) 0.8634272174147134 89 Cpa|evm.model.tig00000912.6 Protein translocation.peroxisome.importomer translocation system.cargo-receptor system.Pex5 component 0.8632331656519463 90 Cpa|evm.model.tig00020909.35 Cytoskeleton.actin and tubulin folding.Prefoldin co-chaperone complex.PFD3 component 0.8631761920031441 91 Cpa|evm.model.tig00000073.33 Multi-process regulation.SnRK1 metabolic regulator system.SnRK1 kinase complex.alpha catalytic subunit 0.8626245166931894 93 Cpa|evm.model.tig00020553.153 Lipid metabolism.sphingolipid metabolism.serine C-palmitoyltransferase complex.catalytic subunit 1 0.8625529877509462 94 Cpa|evm.model.tig00020684.33 RNA biosynthesis.transcriptional activation.CPP1-like transcription factor 0.8620604923265487 95 Cpa|evm.model.tig00020553.139 0.8619965245628095 96 Cpa|evm.model.tig00001049.14 RNA biosynthesis.transcriptional activation.TUB transcription factor 0.8619403627313984 97 Cpa|evm.model.tig00001094.30 Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica 0.8615075354435948 98 Cpa|evm.model.tig00001590.11 0.8608559411848322 99