Sequence Description Alias PCC hrr Cpa|evm.model.tig00000912.27 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase 0.9390793927035342 1 Cpa|evm.model.tig00000402.41 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B1 component 0.9266152906279498 2 Cpa|evm.model.tig00000241.27 ARF guanine-nucleotide exchange factor GNL2 OS=Arabidopsis thaliana 0.9250710909071176 3 Cpa|evm.model.tig00000217.33 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1G large gamma subunit 0.9202332655920487 4 Cpa|evm.model.tig00020554.128 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase-activating (ARF-GAP) activities.class II ARF-GAP protein 0.9113813816873916 14 Cpa|evm.model.tig00020553.163 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-13 motor protein 0.9101998076897523 12 Cpa|evm.model.tig00021350.40 0.9044895942271501 12 Cpa|evm.model.tig00021348.94 0.9038066220083165 33 Cpa|evm.model.tig00021319.38 Protein modification.peptide maturation.endomembrane system.SPP signal peptidase 0.9034033949673381 18 Cpa|evm.model.tig00001049.14 RNA biosynthesis.transcriptional activation.TUB transcription factor 0.9026524005338006 16 Cpa|evm.model.tig00020703.10 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component 0.8968801017055937 19 Cpa|evm.model.tig00000350.27 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.alpha subunit 0.8949074806488676 26 Cpa|evm.model.tig00001049.12 0.8890002058890915 42 Cpa|evm.model.tig00000842.2 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana 0.8858484951702216 65 Cpa|evm.model.tig00000350.15 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.MRE11 component 0.8849786271974482 41 Cpa|evm.model.tig00021464.26 0.8781946522988334 16 Cpa|evm.model.tig00020531.35 0.8775171667028082 78 Cpa|evm.model.tig00000944.35 0.8760670241409564 18 Cpa|evm.model.tig00020563.191 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.CUL1/CUL2 scaffold component 0.8752277044442857 19 Cpa|evm.model.tig00021357.29 Protein modification.phosphorylation.SCY1 kinase 0.8740304730577674 20 Cpa|evm.model.tig00000704.61 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.TOZ assembly factor 0.872181837968377 22 Cpa|evm.model.tig00000944.22 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SKIP/MAC6 component 0.871945188749785 34 Cpa|evm.model.tig00000829.30 Protein modification.phosphorylation.ULK kinase 0.8707249265856243 77 Cpa|evm.model.tig00020554.11 Cytoplasmic dynein 2 light intermediate chain 1 OS=Chlamydomonas reinhardtii 0.8704329104312065 26 Cpa|evm.model.tig00020903.19 0.8695311853311897 31 Cpa|evm.model.tig00000350.28 Chromatin organisation.chromatin remodeling complexes.RVB helicase component 0.8692612748249134 93 Cpa|evm.model.tig00000615.76 0.8679866571266258 29 Cpa|evm.model.tig00022075.35 0.8648676118455261 90 Cpa|evm.model.tig00000217.25 Chromatin structure-remodeling complex protein SYD OS=Arabidopsis thaliana 0.8646657127040802 37 Cpa|evm.model.tig00001206.18 0.8598863898505116 48 Cpa|evm.model.tig00000980.6 Protein modification.phosphorylation.atypical kinase families.RIO kinase 0.8594974576637074 37 Cpa|evm.model.tig00001093.6 Synaptotagmin-5 OS=Arabidopsis thaliana 0.8566179774602529 75 Cpa|evm.model.tig00020553.152 0.8550412984814567 51 Cpa|evm.model.tig00000555.1 RNA biosynthesis.transcriptional activation.bZIP superfamily.bZIP transcription factor 0.8550069428579197 44 Cpa|evm.model.tig00000829.3 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component 0.8521076999793289 90 Cpa|evm.model.tig00001372.8 0.8517650594992088 94 Cpa|evm.model.tig00020684.33 RNA biosynthesis.transcriptional activation.CPP1-like transcription factor 0.8487853808788118 64 Cpa|evm.model.tig00000405.50 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP1 phosphatase 0.8468806544777187 50 Cpa|evm.model.tig00001187.20 26S proteasome regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica 0.8460076084577389 98 Cpa|evm.model.tig00000829.11 Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana 0.8455125847146748 67 Cpa|evm.model.tig00000388.17 0.8438852549521789 54 Cpa|evm.model.tig00020544.6 0.8437584615476948 79 Cpa|evm.model.tig00000852.36 0.8434427815434374 56 Cpa|evm.model.tig00000203.29 0.8408089252379216 57 Cpa|evm.model.tig00000076.105 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.8407729710807792 78 Cpa|evm.model.tig00000789.44 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP155 scaffold nucleoporin 0.8399937565802424 65 Cpa|evm.model.tig00020531.30 0.8384105550034193 98 Cpa|evm.model.tig00000692.13 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-14 motor protein 0.8379929989060539 62 Cpa|evm.model.tig00021589.34 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component 0.8360192847867522 65 Cpa|evm.model.tig00020685.15 0.8347064528891632 89 Cpa|evm.model.tig00000042.6 0.8328467305155346 71 Cpa|evm.model.tig00020554.58 VAMP-like protein YKT61 OS=Arabidopsis thaliana 0.8301419031645983 79 Cpa|evm.model.tig00000383.35 tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica 0.8300315450217127 94 Cpa|evm.model.tig00022075.25 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp43 RNA helicase 0.8286984281886257 85 Cpa|evm.model.tig00020553.153 Lipid metabolism.sphingolipid metabolism.serine C-palmitoyltransferase complex.catalytic subunit 1 0.8278698561853268 86 Cpa|evm.model.tig00000852.43 0.8275866909513673 88 Cpa|evm.model.tig00000073.38 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group(50.2.7 : 55.0) 0.8267320574262201 93 Cpa|evm.model.tig00000842.16 0.8254498809712871 97 Cpa|evm.model.tig00000158.16 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 0.8254178244361033 99