LOC_Os05g43520.2


Description : transcription factor (BSD)


Gene families : OG0002495 (Archaeplastida) Phylogenetic Tree(s): OG0002495_tree ,
OG_05_0001801 (LandPlants) Phylogenetic Tree(s): OG_05_0001801_tree ,
OG_06_0001671 (SeedPlants) Phylogenetic Tree(s): OG_06_0001671_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g43520.2
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
Zm00001e027393_P001 No alias transcription factor (BSD) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005607 BSD_dom 199 254
No external refs found!
AT1G77310 expression profile

Expression profile for AT1G77310 (AT1G77310)

Description : BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G21610.1); Has 493 Blast hits to 482 proteins in 163 species: Archae - 0; Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65; Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink).

Condition Specificity: Egg cell (SPM: 0.96, entropy: 0.97, tau: 0.97)
Tissue Specificity: Female (SPM: 0.97, entropy: 1.88, tau: 0.93)

All conditions


Tissue Specificity

Note: SPM calculations for this profile are done using the maximum value.