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  5. Gb_20678

Gb_20678


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0000041 (SeedPlants) Phylogenetic Tree(s): OG_06_0000041_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20678
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00115760 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
AMTR_s00001p00270650 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.07 Archaeplastida
AMTR_s00010p00264980 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
AMTR_s00044p00061510 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AMTR_s00119p00058870 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.07 Archaeplastida
AT1G12560 ATEXP7, EXPA7,... expansin A7 0.02 Archaeplastida
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.03 Archaeplastida
AT1G26770 ATEXPA10,... expansin A10 0.03 Archaeplastida
AT1G62980 EXPA18, EXP18,... expansin A18 0.02 Archaeplastida
AT1G69530 ATEXPA1, EXP1,... expansin A1 0.05 Archaeplastida
AT2G03090 EXP15, ATEXPA15,... expansin A15 0.05 Archaeplastida
AT2G28950 EXPA6, ATEXP6,... expansin A6 0.09 Archaeplastida
AT2G37640 ATEXPA3, EXP3,... Barwin-like endoglucanases superfamily protein 0.06 Archaeplastida
AT2G40610 EXPA8, ATHEXP... expansin A8 0.05 Archaeplastida
AT3G29030 EXP5, ATHEXP... expansin A5 0.03 Archaeplastida
AT4G01630 ATHEXP ALPHA... expansin A17 0.05 Archaeplastida
AT5G39280 ATHEXP ALPHA ... expansin A23 0.02 Archaeplastida
AT5G39290 ATEXP26, ATHEXP... expansin A26 0.04 Archaeplastida
AT5G39300 ATEXPA25,... expansin A25 0.03 Archaeplastida
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.03 Archaeplastida
GSVIVT01011437001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
GSVIVT01014362001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
GSVIVT01019889001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
GSVIVT01029411001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.06 Archaeplastida
GSVIVT01032681001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01032935001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01035233001 No alias Expansin-A13 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_01958 No alias alpha-class expansin 0.04 Archaeplastida
Gb_04404 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os01g14660.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os01g16770.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os02g16839.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os02g51040.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os03g06000.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os03g06010.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os03g06020.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os04g15840.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os05g19600.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os05g39990.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os06g01920.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os06g41700.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os08g44790.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os10g30330.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os10g30340.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os10g39110.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os12g36040.1 No alias alpha-class expansin 0.03 Archaeplastida
MA_100868g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_104065g0020 No alias alpha-class expansin 0.02 Archaeplastida
MA_10425823g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_10433559g0020 No alias alpha-class expansin 0.03 Archaeplastida
MA_130258g0010 No alias alpha-class expansin 0.08 Archaeplastida
MA_274624g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_275115g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_30127g0010 No alias alpha-class expansin 0.07 Archaeplastida
MA_3618g0010 No alias Expansin-A15 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_36587g0010 No alias alpha-class expansin 0.07 Archaeplastida
MA_37884g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_45587g0020 No alias alpha-class expansin 0.11 Archaeplastida
MA_474624g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_4979g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_6644365g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_70880g0010 No alias alpha-class expansin 0.07 Archaeplastida
MA_7218g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_91602g0010 No alias Expansin-A2 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Mp1g22700.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp1g22730.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp1g22740.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp1g24230.1 No alias alpha-class expansin 0.08 Archaeplastida
Mp1g28890.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp2g18600.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g06900.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp5g01930.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp5g20420.1 No alias alpha-class expansin 0.04 Archaeplastida
Pp3c12_4560V3.1 No alias expansin A9 0.04 Archaeplastida
Pp3c13_20360V3.1 No alias expansin A9 0.03 Archaeplastida
Pp3c14_18450V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c18_19660V3.1 No alias expansin A9 0.03 Archaeplastida
Pp3c18_19720V3.1 No alias expansin A1 0.06 Archaeplastida
Pp3c20_5780V3.1 No alias expansin A15 0.12 Archaeplastida
Pp3c21_1850V3.1 No alias expansin A1 0.05 Archaeplastida
Pp3c21_1940V3.1 No alias expansin A9 0.02 Archaeplastida
Pp3c22_760V3.1 No alias expansin A1 0.06 Archaeplastida
Pp3c8_1320V3.1 No alias expansin A4 0.02 Archaeplastida
Pp3c8_14900V3.1 No alias expansin A14 0.03 Archaeplastida
Pp3c8_870V3.1 No alias expansin A1 0.02 Archaeplastida
Smo143857 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo409954 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo75237 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo90935 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo91129 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
Smo95369 No alias Expansin-A10 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc02g081210.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc02g088100.3.1 No alias alpha-class expansin 0.11 Archaeplastida
Solyc03g031840.3.1 No alias No annotation 0.02 Archaeplastida
Solyc03g115270.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc03g115345.1.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc03g115890.3.1 No alias alpha-class expansin 0.06 Archaeplastida
Solyc04g081870.4.1 No alias alpha-class expansin 0.06 Archaeplastida
Solyc05g052250.3.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc06g076220.3.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc07g063210.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Solyc08g080060.4.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc09g010860.4.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc12g089380.2.1 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e000429_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e003887_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e003888_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e003889_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e004714_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e011741_P001 No alias alpha-class expansin 0.06 Archaeplastida
Zm00001e014220_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e014221_P001 No alias Expansin-A22 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e017334_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e019433_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e036693_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e038997_P001 No alias alpha-class expansin 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
BP GO:0001932 regulation of protein phosphorylation IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004664 prephenate dehydratase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009094 L-phenylalanine biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019900 kinase binding IEP Neighborhood
MF GO:0019901 protein kinase binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0042325 regulation of phosphorylation IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0043549 regulation of kinase activity IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0045859 regulation of protein kinase activity IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051338 regulation of transferase activity IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Neighborhood
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 152 229
IPR009009 RlpA-like_DPBB 56 141
No external refs found!