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  5. Gb_21016

Gb_21016


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 679.0)


Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0056951 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0049902 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21016
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Gb_11039 No alias RNA editing factor (CRR21) 0.09 Archaeplastida
Gb_16072 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_25868 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
Gb_27291 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
Gb_38897 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_130999g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_137736g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_820066g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
Smo125582 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 778 902
IPR002885 Pentatricopeptide_repeat 385 410
IPR002885 Pentatricopeptide_repeat 413 439
IPR002885 Pentatricopeptide_repeat 281 308
IPR002885 Pentatricopeptide_repeat 577 604
IPR002885 Pentatricopeptide_repeat 679 704
IPR002885 Pentatricopeptide_repeat 309 357
IPR002885 Pentatricopeptide_repeat 248 279
IPR002885 Pentatricopeptide_repeat 147 193
IPR002885 Pentatricopeptide_repeat 504 551
IPR002885 Pentatricopeptide_repeat 605 653
IPR002885 Pentatricopeptide_repeat 473 501
IPR002885 Pentatricopeptide_repeat 440 470
No external refs found!