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  5. Gb_21093

Gb_21093


Description : component UPF3 of RNA quality control Exon Junction complex


Gene families : OG0002934 (Archaeplastida) Phylogenetic Tree(s): OG0002934_tree ,
OG_05_0002802 (LandPlants) Phylogenetic Tree(s): OG_05_0002802_tree ,
OG_06_0003003 (SeedPlants) Phylogenetic Tree(s): OG_06_0003003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21093
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00188270 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
LOC_Os04g35920.2 No alias component UPF3 of RNA quality control Exon Junction complex 0.04 Archaeplastida
MA_102917g0010 No alias component UPF3 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Mp1g05590.1 No alias component UPF3 of RNA quality control Exon Junction complex 0.01 Archaeplastida
Pp3c12_4230V3.1 No alias Smg-4/UPF3 family protein 0.02 Archaeplastida
Zm00001e040916_P004 No alias component UPF3 of RNA quality control Exon Junction complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0004555 alpha,alpha-trehalase activity IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
MF GO:0015927 trehalase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005120 UPF3_dom 98 258
No external refs found!