1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT2G35030

AT2G35030


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0021077 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0020787 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0020059 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G35030
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
MA_12211g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Neighborhood
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003938 IMP dehydrogenase activity IEP Neighborhood
CC GO:0005677 chromatin silencing complex IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0006177 GMP biosynthetic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006266 DNA ligation IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009163 nucleoside biosynthetic process IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009260 ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009933 meristem structural organization IEP Neighborhood
BP GO:0010048 vernalization response IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
CC GO:0010369 chromocenter IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
CC GO:0016607 nuclear speck IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
BP GO:0031056 regulation of histone modification IEP Neighborhood
BP GO:0031058 positive regulation of histone modification IEP Neighborhood
BP GO:0031060 regulation of histone methylation IEP Neighborhood
BP GO:0031062 positive regulation of histone methylation IEP Neighborhood
BP GO:0031401 positive regulation of protein modification process IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
CC GO:0035097 histone methyltransferase complex IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042451 purine nucleoside biosynthetic process IEP Neighborhood
BP GO:0042455 ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046037 GMP metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0046390 ribose phosphate biosynthetic process IEP Neighborhood
CC GO:0048188 Set1C/COMPASS complex IEP Neighborhood
BP GO:0048532 anatomical structure arrangement IEP Neighborhood
BP GO:0048572 short-day photoperiodism IEP Neighborhood
BP GO:0048575 short-day photoperiodism, flowering IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050826 response to freezing IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051569 regulation of histone H3-K4 methylation IEP Neighborhood
BP GO:0051571 positive regulation of histone H3-K4 methylation IEP Neighborhood
BP GO:0061085 regulation of histone H3-K27 methylation IEP Neighborhood
BP GO:0061087 positive regulation of histone H3-K27 methylation IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090568 nuclear transcriptional repressor complex IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Neighborhood
BP GO:1902275 regulation of chromatin organization IEP Neighborhood
BP GO:1905269 positive regulation of chromatin organization IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 538 567
IPR002885 Pentatricopeptide_repeat 234 263
IPR002885 Pentatricopeptide_repeat 370 390
IPR002885 Pentatricopeptide_repeat 78 103
IPR002885 Pentatricopeptide_repeat 141 171
IPR002885 Pentatricopeptide_repeat 172 201
IPR002885 Pentatricopeptide_repeat 203 233
IPR002885 Pentatricopeptide_repeat 110 140
IPR002885 Pentatricopeptide_repeat 293 341
IPR002885 Pentatricopeptide_repeat 398 444
No external refs found!