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  5. Gb_21269

Gb_21269


Description : Cold shock protein 1 OS=Arabidopsis thaliana (sp|o65639|csp1_arath : 105.0)


Gene families : OG0005188 (Archaeplastida) Phylogenetic Tree(s): OG0005188_tree ,
OG_05_0004258 (LandPlants) Phylogenetic Tree(s): OG_05_0004258_tree ,
OG_06_0057166 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21269
Cluster HCCA: Cluster_318

Target Alias Description ECC score Gene Family Method Actions
MA_102570g0010 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 47 61
IPR001878 Znf_CCHC 103 118
IPR001878 Znf_CCHC 297 313
IPR001878 Znf_CCHC 65 80
IPR001878 Znf_CCHC 399 414
IPR001878 Znf_CCHC 263 279
IPR001878 Znf_CCHC 147 164
IPR001878 Znf_CCHC 209 226
IPR001878 Znf_CCHC 167 183
IPR001878 Znf_CCHC 331 345
No external refs found!