Gb_21535

Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 527.0)

Gene families : OG0011976 (Archaeplastida) Phylogenetic Tree(s): OG0011976_tree ,
OG_05_0011565 (LandPlants) Phylogenetic Tree(s): OG_05_0011565_tree ,
OG_06_0012367 (SeedPlants) Phylogenetic Tree(s): OG_06_0012367_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_21535
Cluster	HCCA: Cluster_300

Target	Alias	Description	ECC score	Gene Family Method
Gb_08062	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.07	Archaeplastida
Gb_25843	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.06	Archaeplastida
MA_470679g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.1	Archaeplastida
MA_65862g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	335	382
IPR002885	Pentatricopeptide_repeat	234	281
IPR002885	Pentatricopeptide_repeat	435	472
IPR002885	Pentatricopeptide_repeat	608	655
IPR032867	DYW_dom	767	856
IPR002885	Pentatricopeptide_repeat	683	706
IPR002885	Pentatricopeptide_repeat	399	433

External Links

No external refs found!