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  5. Gb_21593

Gb_21593


Description : Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana (sp|q9c9a2|pp112_arath : 430.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0001191 (SeedPlants) Phylogenetic Tree(s): OG_06_0001191_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21593
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.05 Archaeplastida
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.04 Archaeplastida
GSVIVT01026463001 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.03 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.05 Archaeplastida
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os03g53490.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.05 Archaeplastida

Other formats, compatible with LOC_Os05g28720.1

 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.02 Archaeplastida
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_21580g0010 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida
MA_929381g0010 No alias OTP43 mitochondrial RNA splicing factor 0.04 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 Archaeplastida
Solyc03g117570.3.1 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.03 Archaeplastida
Solyc09g082390.3.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.06 Archaeplastida
Zm00001e006773_P001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 261 308
IPR002885 Pentatricopeptide_repeat 402 449
IPR002885 Pentatricopeptide_repeat 332 378
IPR002885 Pentatricopeptide_repeat 475 519
IPR002885 Pentatricopeptide_repeat 230 259
IPR002885 Pentatricopeptide_repeat 196 225
No external refs found!