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  5. Gb_21699

Gb_21699


Description : SMG7 Nonsense-Mediated mRNA Decay protein


Gene families : OG0002555 (Archaeplastida) Phylogenetic Tree(s): OG0002555_tree ,
OG_05_0002119 (LandPlants) Phylogenetic Tree(s): OG_05_0002119_tree ,
OG_06_0021498 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21699
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01007284001 No alias Protein SMG7L OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01033622001 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 Archaeplastida
GSVIVT01037278001 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 Archaeplastida
MA_10435713g0020 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.02 Archaeplastida
MA_32980g0010 No alias Protein SMG7 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Mp8g12080.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.04 Archaeplastida
Pp3c7_5420V3.1 No alias Telomerase activating protein Est1 0.02 Archaeplastida
Solyc12g019960.2.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.04 Archaeplastida
Zm00001e009613_P002 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR018834 DNA/RNA-bd_Est1-type 209 552
IPR019458 EST1 69 196
No external refs found!