Gb_21972

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 231.0)

Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_21972
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
Gb_03442	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.09	Archaeplastida
Gb_08105	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_18335	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.07	Archaeplastida
Gb_26269	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_28622	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_36579	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_39395	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_41335	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	38	154

External Links

No external refs found!