Gb_22434


Description : Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana (sp|q9sgh2|mbd9_arath : 789.0)


Gene families : OG0005252 (Archaeplastida) Phylogenetic Tree(s): OG0005252_tree ,
OG_05_0005859 (LandPlants) Phylogenetic Tree(s): OG_05_0005859_tree ,
OG_06_0008214 (SeedPlants) Phylogenetic Tree(s): OG_06_0008214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_22434
Cluster HCCA: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267510 evm_27.TU.AmTr_v1... Methyl-CpG-binding domain-containing protein 9... 0.08 Archaeplastida
AT3G01460 ATMBD9, MBD9 methyl-CPG-binding domain 9 0.07 Archaeplastida
GSVIVT01020232001 No alias Methyl-CpG-binding domain-containing protein 9... 0.04 Archaeplastida
MA_10426475g0010 No alias Methyl-CpG-binding domain-containing protein 9... 0.03 Archaeplastida
MA_10435977g0020 No alias Methyl-CpG-binding domain-containing protein 9... 0.08 Archaeplastida
MA_41907g0010 No alias Methyl-CpG-binding domain-containing protein 9... 0.04 Archaeplastida
Mp8g01420.1 No alias Methyl-CpG-binding domain-containing protein 9... 0.02 Archaeplastida
Pp3c1_860V3.1 No alias methyl-CPG-binding domain 9 0.05 Archaeplastida
Pp3c2_35750V3.1 No alias methyl-CPG-binding domain 9 0.06 Archaeplastida
Pp3c6_8120V3.1 No alias methyl-CPG-binding domain 9 0.08 Archaeplastida
Solyc05g005640.4.1 No alias Methyl-CpG-binding domain-containing protein 9... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 322 371
IPR019787 Znf_PHD-finger 94 140
IPR019787 Znf_PHD-finger 1406 1452
IPR028941 WHIM2_dom 1897 2032
IPR028942 WHIM1_dom 1488 1532
IPR001487 Bromodomain 1295 1349
No external refs found!