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  5. Gb_22658

Gb_22658


Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 557.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0018337 (LandPlants) Phylogenetic Tree(s): OG_05_0018337_tree ,
OG_06_0027581 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_22658
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_35396 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
Gb_36636 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_40766 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_103380g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_116829g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_18383g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.09 Archaeplastida
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_193080g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_19715g0020 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_215359g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_3471g0010 No alias RNA editing factor (MEF19) 0.06 Archaeplastida
MA_3612g0010 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
MA_470025g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_68707g0010 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_835083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.08 Archaeplastida
MA_9354530g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Smo82255 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.03 Archaeplastida
Solyc02g065560.1.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 Archaeplastida
Solyc02g070710.3.1 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.06 Archaeplastida
Solyc04g005460.1.1 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.04 Archaeplastida
Solyc04g063300.3.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
Solyc07g005740.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc08g078570.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc09g075170.1.1 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.03 Archaeplastida
Zm00001e000335_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
Zm00001e028503_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.03 Archaeplastida
Zm00001e041893_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 167 199
IPR002885 Pentatricopeptide_repeat 94 152
IPR002885 Pentatricopeptide_repeat 745 774
IPR002885 Pentatricopeptide_repeat 378 400
IPR002885 Pentatricopeptide_repeat 680 703
IPR002885 Pentatricopeptide_repeat 503 550
IPR002885 Pentatricopeptide_repeat 605 652
IPR002885 Pentatricopeptide_repeat 303 350
IPR002885 Pentatricopeptide_repeat 201 249
IPR002885 Pentatricopeptide_repeat 404 450
No external refs found!