Gb_22686


Description : transcription factor (TUB)


Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree ,
OG_06_0053375 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_22686
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
AMTR_s00130p00115490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
AT3G06380 TLP9, ATTLP9 tubby-like protein 9 0.03 Archaeplastida
Cpa|evm.model.tig00001049.14 No alias RNA biosynthesis.transcriptional activation.TUB... 0.01 Archaeplastida
Cpa|evm.model.tig00020603.38 No alias RNA biosynthesis.transcriptional activation.TUB... 0.01 Archaeplastida
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.02 Archaeplastida
MA_103920g0010 No alias transcription factor (TUB) 0.02 Archaeplastida
MA_169150g0010 No alias transcription factor (TUB) 0.02 Archaeplastida
Pp3c23_17770V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Smo83983 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Solyc04g071750.4.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.04 Archaeplastida
Zm00001e001672_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e023326_P001 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e024284_P002 No alias transcription factor (TUB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004725 protein tyrosine phosphatase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005047 signal recognition particle binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005785 signal recognition particle receptor complex IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 184 233
IPR000007 Tubby_C 248 537
No external refs found!