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  5. Gb_22860

Gb_22860


Description : Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana (sp|q9fvx2|pp129_arath : 433.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0001191 (SeedPlants) Phylogenetic Tree(s): OG_06_0001191_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_22860
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.02 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.05 Archaeplastida
Gb_12358 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os05g28720.1 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 Archaeplastida
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
MA_6712793g0010 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida
MA_929381g0010 No alias OTP43 mitochondrial RNA splicing factor 0.03 Archaeplastida
Solyc03g112560.4.1 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.05 Archaeplastida
Solyc10g049570.3.1 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.05 Archaeplastida
Zm00001e005553_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e005655_P001 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida
Zm00001e006773_P001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
Zm00001e010274_P001 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.02 Archaeplastida
Zm00001e015034_P001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.03 Archaeplastida
Zm00001e028873_P001 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 355 383
IPR002885 Pentatricopeptide_repeat 157 186
IPR033443 PPR_long 393 542
IPR002885 Pentatricopeptide_repeat 191 236
IPR002885 Pentatricopeptide_repeat 301 348
No external refs found!