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  5. Gb_22996

Gb_22996


Description : Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana (sp|q9si53|pp147_arath : 580.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree ,
OG_06_0056876 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_22996
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01004939001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01007645001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.04 Archaeplastida
GSVIVT01007937001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.04 Archaeplastida
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 Archaeplastida
GSVIVT01011735001 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.05 Archaeplastida
GSVIVT01016860001 No alias Putative pentatricopeptide repeat-containing protein... 0.1 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01017378001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
GSVIVT01018018001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.04 Archaeplastida
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
GSVIVT01018597001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
GSVIVT01019408001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.09 Archaeplastida
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 Archaeplastida
GSVIVT01023644001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
GSVIVT01024870001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01032950001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01036943001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
GSVIVT01037332001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 382 430
IPR002885 Pentatricopeptide_repeat 151 198
IPR002885 Pentatricopeptide_repeat 280 328
IPR032867 DYW_dom 555 679
IPR002885 Pentatricopeptide_repeat 224 251
IPR002885 Pentatricopeptide_repeat 60 82
IPR002885 Pentatricopeptide_repeat 456 480
IPR002885 Pentatricopeptide_repeat 252 278
No external refs found!