AT2G36740 (SWC2, ATSWC2)

Aliases : SWC2, ATSWC2

Description : sequence-specific DNA binding transcription factors;DNA binding;DNA binding

Gene families : OG0007496 (Archaeplastida) Phylogenetic Tree(s): OG0007496_tree ,
OG_05_0007701 (LandPlants) Phylogenetic Tree(s): OG_05_0007701_tree ,
OG_06_0008503 (SeedPlants) Phylogenetic Tree(s): OG_06_0008503_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G36740
Cluster	HCCA: Cluster_258

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os08g09320.1	No alias	component SWC2 of SWR1 chromatin remodeling complex	0.02	Archaeplastida
Mp1g21470.1	No alias	component SWC2 of SWR1 chromatin remodeling complex	0.02	Archaeplastida
Solyc04g009830.3.1	No alias	component SWC2 of SWR1 chromatin remodeling complex	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008284	positive regulation of cell proliferation	RCA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0042127	regulation of cell proliferation	None	Extended
BP	GO:0042742	defense response to bacterium	RCA	Interproscan
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000060	protein import into nucleus, translocation	IEP	Neighborhood
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0000278	mitotic cell cycle	IEP	Neighborhood
CC	GO:0000815	ESCRT III complex	IEP	Neighborhood
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0004810	tRNA adenylyltransferase activity	IEP	Neighborhood
CC	GO:0005654	nucleoplasm	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006513	protein monoubiquitination	IEP	Neighborhood
BP	GO:0006997	nucleus organization	IEP	Neighborhood
BP	GO:0007049	cell cycle	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009404	toxin metabolic process	IEP	Neighborhood
BP	GO:0009407	toxin catabolic process	IEP	Neighborhood
BP	GO:0009688	abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010390	histone monoubiquitination	IEP	Neighborhood
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016574	histone ubiquitination	IEP	Neighborhood
MF	GO:0017025	TBP-class protein binding	IEP	Neighborhood
BP	GO:0033523	histone H2B ubiquitination	IEP	Neighborhood
CC	GO:0036452	ESCRT complex	IEP	Neighborhood
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	Neighborhood
BP	GO:0043687	post-translational protein modification	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0070566	adenylyltransferase activity	IEP	Neighborhood
BP	GO:0098754	detoxification	IEP	Neighborhood
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	Neighborhood
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
MF	GO:1990817	RNA adenylyltransferase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008895	Vps72/YL1	14	239
IPR013272	Vps72/YL1_C	270	298

External Links

No external refs found!

AT2G36740 (SWC2, ATSWC2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation