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  5. Gb_23126

Gb_23126


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 725.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23126
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 Archaeplastida
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.03 Archaeplastida
Gb_01648 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_02065 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_03136 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_04144 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
Gb_05883 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_07570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_08518 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_08619 No alias RNA editing factor (MEF19) 0.07 Archaeplastida
Gb_11389 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_11664 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_14445 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_16515 No alias RNA editing factor (MEF11) 0.04 Archaeplastida
Gb_17295 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_20774 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_21965 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_23924 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_29534 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_29768 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.06 Archaeplastida
Gb_29868 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_29995 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_31546 No alias RNA editing factor (MEF3) 0.04 Archaeplastida
Gb_32256 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
Gb_33070 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_33575 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_37516 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_37517 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_38297 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_38750 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.04 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
LOC_Os07g39910.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
MA_10311934g0010 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.04 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_10429540g0010 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.04 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_109134g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_116829g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_117650g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.05 Archaeplastida
MA_131g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.09 Archaeplastida
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
MA_28390g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_285318g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.06 Archaeplastida
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_3502g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
MA_482767g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_5481g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.05 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_62181g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_63139g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.07 Archaeplastida
MA_73205g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 Archaeplastida
MA_86739g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 Archaeplastida
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.08 Archaeplastida
MA_958908g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Pp3c17_5040V3.1 No alias mitochondrial editing factor 22 0.02 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo82024 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo82255 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e011417_P001 No alias RNA editing factor (CRR28) 0.03 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 645 669
IPR002885 Pentatricopeptide_repeat 343 368
IPR002885 Pentatricopeptide_repeat 371 397
IPR032867 DYW_dom 744 868
IPR002885 Pentatricopeptide_repeat 571 618
IPR002885 Pentatricopeptide_repeat 470 517
IPR002885 Pentatricopeptide_repeat 268 315
IPR002885 Pentatricopeptide_repeat 166 214
IPR002885 Pentatricopeptide_repeat 233 265
No external refs found!