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  5. Gb_23196

Gb_23196


Description : Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana (sp|q9syk1|ppr11_arath : 410.0)


Gene families : OG0011424 (Archaeplastida) Phylogenetic Tree(s): OG0011424_tree ,
OG_05_0011281 (LandPlants) Phylogenetic Tree(s): OG_05_0011281_tree ,
OG_06_0010435 (SeedPlants) Phylogenetic Tree(s): OG_06_0010435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23196
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01027435001 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.04 Archaeplastida
MA_90107g0010 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.03 Archaeplastida
Zm00001e028501_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 452 483
IPR002885 Pentatricopeptide_repeat 349 378
IPR002885 Pentatricopeptide_repeat 270 300
IPR002885 Pentatricopeptide_repeat 135 163
IPR002885 Pentatricopeptide_repeat 99 125
IPR002885 Pentatricopeptide_repeat 327 344
IPR002885 Pentatricopeptide_repeat 493 540
IPR002885 Pentatricopeptide_repeat 200 249
IPR002885 Pentatricopeptide_repeat 386 434
No external refs found!