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  5. Gb_23231

Gb_23231


Description : Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana (sp|q9lsl9|pp445_arath : 634.0)


Gene families : OG0003504 (Archaeplastida) Phylogenetic Tree(s): OG0003504_tree ,
OG_05_0002667 (LandPlants) Phylogenetic Tree(s): OG_05_0002667_tree ,
OG_06_0001694 (SeedPlants) Phylogenetic Tree(s): OG_06_0001694_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23231
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.02 Archaeplastida
AT5G65560 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01038280001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida
Solyc10g081880.3.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida
Zm00001e016326_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 Archaeplastida
Zm00001e022836_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 718 766
IPR002885 Pentatricopeptide_repeat 232 277
IPR002885 Pentatricopeptide_repeat 298 347
IPR002885 Pentatricopeptide_repeat 893 942
IPR002885 Pentatricopeptide_repeat 508 557
IPR002885 Pentatricopeptide_repeat 805 837
IPR002885 Pentatricopeptide_repeat 578 627
IPR002885 Pentatricopeptide_repeat 648 697
IPR002885 Pentatricopeptide_repeat 438 487
IPR002885 Pentatricopeptide_repeat 199 226
IPR002885 Pentatricopeptide_repeat 862 890
IPR002885 Pentatricopeptide_repeat 399 430
IPR002885 Pentatricopeptide_repeat 364 397
No external refs found!