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  5. Gb_23333

Gb_23333


Description : Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana (sp|q9fit7|pp442_arath : 588.0)


Gene families : OG0009405 (Archaeplastida) Phylogenetic Tree(s): OG0009405_tree ,
OG_05_0009405 (LandPlants) Phylogenetic Tree(s): OG_05_0009405_tree ,
OG_06_0006571 (SeedPlants) Phylogenetic Tree(s): OG_06_0006571_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23333
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
MA_771194g0010 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.06 Archaeplastida
Solyc03g118280.1.1 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 665 714
IPR002885 Pentatricopeptide_repeat 980 1028
IPR002885 Pentatricopeptide_repeat 420 469
IPR002885 Pentatricopeptide_repeat 735 784
IPR002885 Pentatricopeptide_repeat 875 924
IPR002885 Pentatricopeptide_repeat 490 539
IPR002885 Pentatricopeptide_repeat 350 399
IPR002885 Pentatricopeptide_repeat 596 644
IPR002885 Pentatricopeptide_repeat 280 329
IPR002885 Pentatricopeptide_repeat 801 833
IPR002885 Pentatricopeptide_repeat 557 588
IPR002885 Pentatricopeptide_repeat 837 868
IPR002885 Pentatricopeptide_repeat 243 274
IPR002885 Pentatricopeptide_repeat 941 973
No external refs found!