Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG0012195 (Archaeplastida) Phylogenetic Tree(s): OG0012195_tree ,
OG_05_0017487 (LandPlants) Phylogenetic Tree(s): OG_05_0017487_tree ,
OG_06_0020042 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT2G36980 | |
Cluster | HCCA: Cluster_252 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Gb_02413 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | Archaeplastida | |
Gb_32432 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.04 | Archaeplastida | |
MA_135501g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005739 | mitochondrion | ISM | Interproscan |
BP | GO:0008150 | biological_process | ND | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004536 | deoxyribonuclease activity | IEP | Neighborhood |
MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Neighborhood |
BP | GO:0006596 | polyamine biosynthetic process | IEP | Neighborhood |
BP | GO:0007050 | cell cycle arrest | IEP | Neighborhood |
BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
BP | GO:0008216 | spermidine metabolic process | IEP | Neighborhood |
BP | GO:0008295 | spermidine biosynthetic process | IEP | Neighborhood |
BP | GO:0009560 | embryo sac egg cell differentiation | IEP | Neighborhood |
MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Neighborhood |
BP | GO:0019287 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | IEP | Neighborhood |
CC | GO:0019866 | organelle inner membrane | IEP | Neighborhood |
BP | GO:0022412 | cellular process involved in reproduction in multicellular organism | IEP | Neighborhood |
BP | GO:0030154 | cell differentiation | IEP | Neighborhood |
MF | GO:0034046 | poly(G) binding | IEP | Neighborhood |
MF | GO:0070717 | poly-purine tract binding | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 401 | 448 |
IPR002885 | Pentatricopeptide_repeat | 300 | 347 |
IPR002885 | Pentatricopeptide_repeat | 34 | 81 |
IPR002885 | Pentatricopeptide_repeat | 170 | 214 |
IPR002885 | Pentatricopeptide_repeat | 376 | 398 |
IPR002885 | Pentatricopeptide_repeat | 139 | 167 |
IPR002885 | Pentatricopeptide_repeat | 549 | 574 |
IPR002885 | Pentatricopeptide_repeat | 109 | 132 |
No external refs found! |