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  5. AT2G36980

AT2G36980


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0012195 (Archaeplastida) Phylogenetic Tree(s): OG0012195_tree ,
OG_05_0017487 (LandPlants) Phylogenetic Tree(s): OG_05_0017487_tree ,
OG_06_0020042 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G36980
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
Gb_02413 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_32432 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_135501g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004536 deoxyribonuclease activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
BP GO:0006596 polyamine biosynthetic process IEP Neighborhood
BP GO:0007050 cell cycle arrest IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008216 spermidine metabolic process IEP Neighborhood
BP GO:0008295 spermidine biosynthetic process IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
BP GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
MF GO:0034046 poly(G) binding IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 401 448
IPR002885 Pentatricopeptide_repeat 300 347
IPR002885 Pentatricopeptide_repeat 34 81
IPR002885 Pentatricopeptide_repeat 170 214
IPR002885 Pentatricopeptide_repeat 376 398
IPR002885 Pentatricopeptide_repeat 139 167
IPR002885 Pentatricopeptide_repeat 549 574
IPR002885 Pentatricopeptide_repeat 109 132
No external refs found!