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  5. Gb_23453

Gb_23453


Description : Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana (sp|q9fje6|pp437_arath : 431.0)


Gene families : OG0017567 (Archaeplastida) Phylogenetic Tree(s): OG0017567_tree ,
OG_05_0017330 (LandPlants) Phylogenetic Tree(s): OG_05_0017330_tree ,
OG_06_0016847 (SeedPlants) Phylogenetic Tree(s): OG_06_0016847_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23453
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00041040 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 185 214
IPR002885 Pentatricopeptide_repeat 223 249
IPR002885 Pentatricopeptide_repeat 422 454
IPR002885 Pentatricopeptide_repeat 809 839
IPR002885 Pentatricopeptide_repeat 387 417
IPR002885 Pentatricopeptide_repeat 632 663
IPR002885 Pentatricopeptide_repeat 527 557
IPR002885 Pentatricopeptide_repeat 461 510
IPR002885 Pentatricopeptide_repeat 321 370
IPR002885 Pentatricopeptide_repeat 671 720
IPR002885 Pentatricopeptide_repeat 566 615
IPR002885 Pentatricopeptide_repeat 251 300
IPR002885 Pentatricopeptide_repeat 741 790
No external refs found!