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  5. Gb_23459

Gb_23459


Description : Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana (sp|q9fvx2|pp129_arath : 191.0)


Gene families : OG0006886 (Archaeplastida) Phylogenetic Tree(s): OG0006886_tree ,
OG_05_0005211 (LandPlants) Phylogenetic Tree(s): OG_05_0005211_tree ,
OG_06_0004721 (SeedPlants) Phylogenetic Tree(s): OG_06_0004721_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23459
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01026360001 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.04 Archaeplastida
Gb_32987 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.06 Archaeplastida
Solyc09g097840.2.1 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.09 Archaeplastida
Zm00001e021940_P001 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 379 412
IPR002885 Pentatricopeptide_repeat 421 448
IPR002885 Pentatricopeptide_repeat 282 311
IPR002885 Pentatricopeptide_repeat 250 276
IPR002885 Pentatricopeptide_repeat 453 501
IPR002885 Pentatricopeptide_repeat 314 360
IPR002885 Pentatricopeptide_repeat 522 561
No external refs found!