Gb_23626

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000720 (LandPlants) Phylogenetic Tree(s): OG_05_0000720_tree ,
OG_06_0000544 (SeedPlants) Phylogenetic Tree(s): OG_06_0000544_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_23626
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00263610	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00017p00164980	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AT1G02530	PGP12	P-glycoprotein 12	0.02	Archaeplastida
AT2G47000	ATPGP4, PGP4, ABCB4, MDR4	ATP binding cassette subfamily B4	0.05	Archaeplastida
Cre17.g725150	No alias	ABC transporter B family member 7 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01009946001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
GSVIVT01016706001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01033645001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Gb_13906	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Mp1g26440.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Mp2g21430.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Mp7g04390.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Pp3c14_2470V3.1	No alias	ABC transporter family protein	0.05	Archaeplastida
Pp3c17_16450V3.1	No alias	ATP binding cassette subfamily B19	0.01	Archaeplastida
Pp3c1_31680V3.1	No alias	ABC transporter family protein	0.06	Archaeplastida
Smo408755	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Smo84555	No alias	Solute transport.primary active transport.ABC...	0.08	Archaeplastida
Zm00001e014797_P002	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e028117_P001	No alias	subfamily ABCB transporter	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	1014	1161
IPR003439	ABC_transporter-like	376	524
IPR011527	ABC1_TM_dom	673	942
IPR011527	ABC1_TM_dom	32	306

External Links

No external refs found!

Gb_23626

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation