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  5. Gb_23947

Gb_23947


Description : Laccase-1 OS=Arabidopsis thaliana (sp|q9lms3|lac1_arath : 519.0) & Enzyme classification.EC_1 oxidoreductases.EC_1.10 oxidoreductase acting on diphenol or related substance as donor(50.1.10 : 262.7)


Gene families : OG0000114 (Archaeplastida) Phylogenetic Tree(s): OG0000114_tree ,
OG_05_0000045 (LandPlants) Phylogenetic Tree(s): OG_05_0000045_tree ,
OG_06_0000178 (SeedPlants) Phylogenetic Tree(s): OG_06_0000178_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23947
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00242360 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.02 Archaeplastida
AMTR_s00023p00051360 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.02 Archaeplastida
AMTR_s00045p00045490 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
AT1G18140 LAC1, ATLAC1 laccase 1 0.04 Archaeplastida
AT2G29130 ATLAC2, LAC2 laccase 2 0.03 Archaeplastida
AT2G38080 LAC4, IRX12,... Laccase/Diphenol oxidase family protein 0.03 Archaeplastida
AT5G01190 LAC10 laccase 10 0.03 Archaeplastida
AT5G05390 LAC12 laccase 12 0.03 Archaeplastida
AT5G58910 LAC16 laccase 16 0.02 Archaeplastida
AT5G60020 ATLAC17, LAC17 laccase 17 0.03 Archaeplastida
GSVIVT01012329001 No alias Laccase-14 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01012343001 No alias Laccase-14 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01016513001 No alias Cell wall.lignin.monolignol conjugation and... 0.04 Archaeplastida
GSVIVT01018939001 No alias Laccase-11 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01024795001 No alias Cell wall.lignin.monolignol conjugation and... 0.04 Archaeplastida
GSVIVT01025046001 No alias Cell wall.lignin.monolignol conjugation and... 0.04 Archaeplastida
GSVIVT01032744001 No alias Laccase-12 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01033501001 No alias Laccase-11 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01034003001 No alias Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
GSVIVT01034137001 No alias Cell wall.lignin.monolignol conjugation and... 0.04 Archaeplastida
GSVIVT01034138001 No alias Cell wall.lignin.monolignol conjugation and... 0.04 Archaeplastida
GSVIVT01034139001 No alias Cell wall.lignin.monolignol conjugation and... 0.02 Archaeplastida
GSVIVT01034146001 No alias Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
Gb_34469 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g61160.1 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os01g62480.1 No alias lignin laccase 0.02 Archaeplastida
LOC_Os01g62490.1 No alias lignin laccase 0.03 Archaeplastida
LOC_Os03g18640.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.04 Archaeplastida
LOC_Os05g38390.1 No alias Putative laccase-11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os05g38420.1 No alias lignin laccase 0.03 Archaeplastida
LOC_Os12g01730.1 No alias Laccase-23 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os12g15920.1 No alias Laccase-25 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_10430789g0010 No alias Putative laccase-5 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_10434084g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10434090g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10436564g0010 No alias Putative laccase-17 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_186173g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_19643g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_21316g0010 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.02 Archaeplastida
MA_28768g0010 No alias Laccase-4 OS=Arabidopsis thaliana (sp|o80434|lac4_arath... 0.02 Archaeplastida
MA_33057g0010 No alias lignin laccase 0.03 Archaeplastida
MA_33288g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_414479g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_488981g0010 No alias Laccase-13 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_57140g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_66348g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_7035458g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_75861g0010 No alias Laccase-1 OS=Arabidopsis thaliana (sp|q9lms3|lac1_arath... 0.02 Archaeplastida
MA_812936g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_9916300g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g050540.4.1 No alias Laccase-6 OS=Arabidopsis thaliana (sp|q9zpy2|lac6_arath... 0.02 Archaeplastida
Solyc05g052340.4.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.02 Archaeplastida
Solyc05g052390.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc05g052400.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc06g048860.3.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.03 Archaeplastida
Solyc06g050530.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc06g076330.3.1 No alias lignin laccase 0.04 Archaeplastida
Solyc09g010990.3.1 No alias lignin laccase 0.02 Archaeplastida
Solyc09g011970.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc09g014240.4.1 No alias lignin laccase 0.03 Archaeplastida
Solyc10g076830.2.1 No alias lignin laccase 0.02 Archaeplastida
Solyc10g085090.3.1 No alias No annotation 0.02 Archaeplastida
Zm00001e001354_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e019303_P001 No alias lignin laccase 0.02 Archaeplastida
Zm00001e019412_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e028830_P002 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e031826_P001 No alias lignin laccase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001117 Cu-oxidase 172 322
IPR011707 Cu-oxidase_3 50 160
IPR011706 Cu-oxidase_2 436 489
No external refs found!