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  5. Gb_24012

Gb_24012


Description : TAC5 cofactor of plastid-encoded RNA polymerase


Gene families : OG0007047 (Archaeplastida) Phylogenetic Tree(s): OG0007047_tree ,
OG_05_0007869 (LandPlants) Phylogenetic Tree(s): OG_05_0007869_tree ,
OG_06_0009641 (SeedPlants) Phylogenetic Tree(s): OG_06_0009641_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_24012
Cluster HCCA: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
AT4G13670 PTAC5 plastid transcriptionally active 5 0.03 Archaeplastida
Cre19.g750397 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
LOC_Os04g43420.1 No alias TAC5 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
MA_692g0010 No alias TAC5 cofactor of plastid-encoded RNA polymerase 0.07 Archaeplastida
Mp3g16290.1 No alias TAC5 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Smo404832 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 Archaeplastida
Solyc09g091830.4.1 No alias TAC5 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002477 Peptidoglycan-bd-like 245 296
No external refs found!