1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_24114

Gb_24114


Description : Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana (sp|q9smz2|pp347_arath : 605.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_24114
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 Archaeplastida
GSVIVT01010647001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.04 Archaeplastida
GSVIVT01016860001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01016874001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
GSVIVT01024588001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
GSVIVT01031265001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.08 Archaeplastida
Gb_03579 No alias RNA editing factor (MEF12) 0.07 Archaeplastida
Gb_04079 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
Gb_04417 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_04419 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_05883 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_06560 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.05 Archaeplastida
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_07570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_09793 No alias RNA editing factor (MEF7) 0.05 Archaeplastida
Gb_11664 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_14445 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_17382 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_18986 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_19693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_21270 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_21430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_29868 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.08 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_32453 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_33070 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_36398 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_37254 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_37802 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.07 Archaeplastida
Gb_38441 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
Gb_38750 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_39298 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_40437 No alias RNA editing factor (MEF3) 0.05 Archaeplastida
MA_101084g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_102449g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_103698g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10426261g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
MA_10429540g0010 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.04 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10430355g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_110g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_112594g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_115669g0020 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_117650g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_131g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_140591g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.06 Archaeplastida
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_183278g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
MA_19715g0020 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.07 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_2473g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_24849g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_28390g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.06 Archaeplastida
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_3471g0010 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
MA_3612g0010 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_43497g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_470025g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_472579g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_49629g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.07 Archaeplastida
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.04 Archaeplastida
MA_60579g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_75133g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_81105g0010 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
MA_81436g0010 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_86739g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_8678g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.05 Archaeplastida
MA_9415113g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_953793g0020 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_99220g0010 No alias Pentatricopeptide repeat-containing protein At5g55740,... 0.03 Archaeplastida
Smo110409 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
Smo116755 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Smo26786 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.03 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 906 934
IPR002885 Pentatricopeptide_repeat 839 864
IPR002885 Pentatricopeptide_repeat 189 217
IPR002885 Pentatricopeptide_repeat 325 354
IPR002885 Pentatricopeptide_repeat 531 558
IPR002885 Pentatricopeptide_repeat 356 403
IPR002885 Pentatricopeptide_repeat 286 323
IPR002885 Pentatricopeptide_repeat 765 812
IPR002885 Pentatricopeptide_repeat 663 711
IPR002885 Pentatricopeptide_repeat 458 496
IPR032867 DYW_dom 938 1062
IPR002885 Pentatricopeptide_repeat 108 155
No external refs found!