Gb_25298

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 374.0)

Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0003359 (SeedPlants) Phylogenetic Tree(s): OG_06_0003359_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_25298

Target	Alias	Description	ECC score	Gene Family Method
Gb_08000	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_10191	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_16624	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_18989	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_22530	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_23452	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_29290	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_38369	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	528	637
IPR025724	GAG-pre-integrase_dom	442	509
IPR001878	Znf_CCHC	250	266

External Links

No external refs found!