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  5. Gb_25594

Gb_25594


Description : Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana (sp|q9c639|lhca5_arath : 164.0)


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0009605 (LandPlants) Phylogenetic Tree(s): OG_05_0009605_tree ,
OG_06_0011490 (SeedPlants) Phylogenetic Tree(s): OG_06_0011490_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_25594
Cluster HCCA: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00112770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
AMTR_s00061p00059490 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
AMTR_s00088p00153020 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.02 Archaeplastida
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.03 Archaeplastida
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.04 Archaeplastida
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.02 Archaeplastida
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.03 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.03 Archaeplastida
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.03 Archaeplastida
AT2G05100 LHCB2.1, LHCB2 photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.04 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.03 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.02 Archaeplastida
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.05 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.02 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.02 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre03.g156900 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre04.g232104 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.06 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.02 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.05 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.03 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
GSVIVT01003201001 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.01 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
GSVIVT01009498001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01014439001 No alias Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
GSVIVT01015045001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.02 Archaeplastida
GSVIVT01020858001 No alias Chlorophyll a-b binding protein 40, chloroplastic... 0.03 Archaeplastida
GSVIVT01021405001 No alias Chlorophyll a-b binding protein 21, chloroplastic... 0.02 Archaeplastida
GSVIVT01029789001 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.03 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os02g10390.1 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
LOC_Os02g52650.1 No alias component LHCa5 of LHC-I complex 0.03 Archaeplastida
LOC_Os03g39610.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os04g38410.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.05 Archaeplastida
LOC_Os07g37550.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
LOC_Os09g12540.1 No alias component LHCq of LHC-II complex 0.03 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os11g13890.1 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
MA_10431493g0010 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
MA_10435703g0010 No alias Chlorophyll a-b binding protein 7, chloroplastic... 0.01 Archaeplastida
MA_129206g0010 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.06 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.04 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.03 Archaeplastida
Pp3c12_19200V3.1 No alias photosystem I light harvesting complex gene 2 0.06 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.04 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.04 Archaeplastida
Pp3c1_34240V3.1 No alias light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
Pp3c26_12230V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c2_36480V3.1 No alias photosystem II light harvesting complex gene 2.1 0.01 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_11854V3.1 No alias photosystem I light harvesting complex gene 5 0.05 Archaeplastida
Pp3c4_28370V3.1 No alias light harvesting complex of photosystem II 5 0.04 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c6_6830V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Smo104804 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Smo149722 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Smo270427 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Smo271833 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Smo403333 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.04 Archaeplastida
Smo423144 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Smo444370 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Smo446130 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Solyc01g105030.3.1 No alias component LHCb6 of LHC-II complex 0.05 Archaeplastida
Solyc01g105050.3.1 No alias component LHCb6 of LHC-II complex 0.05 Archaeplastida
Solyc02g070940.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc02g071010.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc02g071030.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc03g005760.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc03g005770.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Solyc03g115900.4.1 No alias component LHCa4 of LHC-I complex 0.05 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
Solyc06g063370.3.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
Solyc06g069730.3.1 No alias component LHCa4 of LHC-I complex 0.05 Archaeplastida
Solyc07g022900.4.1 No alias component LHCa5 of LHC-I complex 0.03 Archaeplastida
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc07g063600.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.05 Archaeplastida
Solyc10g006230.3.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
Solyc10g007690.3.1 No alias component LHCa3 of LHC-I complex 0.06 Archaeplastida
Solyc12g009200.2.1 No alias component LHCa6 of LHC-I complex 0.02 Archaeplastida
Solyc12g011280.2.1 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Zm00001e004940_P001 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e004941_P001 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida
Zm00001e011045_P002 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Zm00001e021290_P001 No alias component LHCb5 of LHC-II complex 0.04 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Zm00001e025141_P001 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
Zm00001e026547_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e032450_P001 No alias Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.03 Archaeplastida
Zm00001e033739_P001 No alias component LHCq of LHC-II complex 0.02 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.03 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Zm00001e035249_P001 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
Zm00001e041918_P001 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0008883 glutamyl-tRNA reductase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 106 184
No external refs found!