Aliases : LOJ
Description : LATERAL ORGAN JUNCTION
Gene families : OG0017611 (Archaeplastida) Phylogenetic Tree(s): OG0017611_tree ,
OG_05_0017379 (LandPlants) Phylogenetic Tree(s): OG_05_0017379_tree ,
OG_06_0016908 (SeedPlants) Phylogenetic Tree(s): OG_06_0016908_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT2G39230 | |
Cluster | HCCA: Cluster_160 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G54980 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
GSVIVT01035807001 | No alias | Pentatricopeptide repeat-containing protein At3g54980,... | 0.04 | Archaeplastida | |
Solyc08g067060.2.1 | No alias | Pentatricopeptide repeat-containing protein At3g54980,... | 0.05 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005739 | mitochondrion | ISM | Interproscan |
BP | GO:0008150 | biological_process | ND | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000959 | mitochondrial RNA metabolic process | IEP | Neighborhood |
BP | GO:0016444 | somatic cell DNA recombination | IEP | Neighborhood |
BP | GO:0042991 | obsolete transcription factor import into nucleus | IEP | Neighborhood |
BP | GO:0080156 | mitochondrial mRNA modification | IEP | Neighborhood |
BP | GO:1900864 | mitochondrial RNA modification | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 592 | 637 |
IPR002885 | Pentatricopeptide_repeat | 482 | 531 |
IPR002885 | Pentatricopeptide_repeat | 798 | 844 |
IPR002885 | Pentatricopeptide_repeat | 693 | 742 |
IPR002885 | Pentatricopeptide_repeat | 344 | 392 |
IPR002885 | Pentatricopeptide_repeat | 550 | 577 |
IPR002885 | Pentatricopeptide_repeat | 656 | 685 |
IPR002885 | Pentatricopeptide_repeat | 457 | 480 |
IPR002885 | Pentatricopeptide_repeat | 419 | 440 |
IPR002885 | Pentatricopeptide_repeat | 312 | 341 |
IPR002885 | Pentatricopeptide_repeat | 244 | 269 |
IPR002885 | Pentatricopeptide_repeat | 770 | 796 |
IPR002885 | Pentatricopeptide_repeat | 208 | 234 |
IPR002885 | Pentatricopeptide_repeat | 171 | 199 |
No external refs found! |