AT2G39230 (LOJ)

Aliases : LOJ

Description : LATERAL ORGAN JUNCTION

Gene families : OG0017611 (Archaeplastida) Phylogenetic Tree(s): OG0017611_tree ,
OG_05_0017379 (LandPlants) Phylogenetic Tree(s): OG_05_0017379_tree ,
OG_06_0016908 (SeedPlants) Phylogenetic Tree(s): OG_06_0016908_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G39230
Cluster	HCCA: Cluster_160

Target	Alias	Description	ECC score	Gene Family Method
AT3G54980	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
GSVIVT01035807001	No alias	Pentatricopeptide repeat-containing protein At3g54980,...	0.04	Archaeplastida
Solyc08g067060.2.1	No alias	Pentatricopeptide repeat-containing protein At3g54980,...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Neighborhood
BP	GO:0016444	somatic cell DNA recombination	IEP	Neighborhood
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	Neighborhood
BP	GO:0080156	mitochondrial mRNA modification	IEP	Neighborhood
BP	GO:1900864	mitochondrial RNA modification	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	592	637
IPR002885	Pentatricopeptide_repeat	482	531
IPR002885	Pentatricopeptide_repeat	798	844
IPR002885	Pentatricopeptide_repeat	693	742
IPR002885	Pentatricopeptide_repeat	344	392
IPR002885	Pentatricopeptide_repeat	550	577
IPR002885	Pentatricopeptide_repeat	656	685
IPR002885	Pentatricopeptide_repeat	457	480
IPR002885	Pentatricopeptide_repeat	419	440
IPR002885	Pentatricopeptide_repeat	312	341
IPR002885	Pentatricopeptide_repeat	244	269
IPR002885	Pentatricopeptide_repeat	770	796
IPR002885	Pentatricopeptide_repeat	208	234
IPR002885	Pentatricopeptide_repeat	171	199

External Links

No external refs found!