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  5. Gb_25842

Gb_25842


Description : C2H2 zinc finger transcription factor


Gene families : OG0000798 (Archaeplastida) Phylogenetic Tree(s): OG0000798_tree ,
OG_05_0000584 (LandPlants) Phylogenetic Tree(s): OG_05_0000584_tree ,
OG_06_0001187 (SeedPlants) Phylogenetic Tree(s): OG_06_0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_25842
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00197580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00199p00026650 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AT1G11490 No alias zinc finger (C2H2 type) family protein 0.04 Archaeplastida
AT1G75710 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
GSVIVT01008925001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01014576001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01024778001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_08005 No alias C2H2 zinc finger transcription factor. sugar efflux... 0.01 Archaeplastida
LOC_Os01g57650.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
LOC_Os03g15790.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os04g59380.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os06g46910.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Pp3c24_2500V3.1 No alias zinc finger protein-related 0.02 Archaeplastida
Smo236040 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.01 Archaeplastida
Solyc02g079920.3.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc07g063970.3.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e019606_P002 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e028937_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!