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Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 464.0)
Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0056494 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0049412 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_25868 | |
| Cluster | HCCA: Cluster_125 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_16072 | No alias | RNA editing factor (OTP82) | 0.05 | Archaeplastida | |
| Gb_21016 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.07 | Archaeplastida | |
| MA_129805g0010 | No alias | Pentatricopeptide repeat-containing protein At4g39530... | 0.05 | Archaeplastida | |
| MA_130999g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.06 | Archaeplastida | |
| MA_137736g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.07 | Archaeplastida | |
| MA_820066g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 388 | 436 |
| IPR002885 | Pentatricopeptide_repeat | 93 | 140 |
| IPR002885 | Pentatricopeptide_repeat | 286 | 334 |
| IPR002885 | Pentatricopeptide_repeat | 462 | 486 |
| IPR002885 | Pentatricopeptide_repeat | 196 | 226 |
| IPR002885 | Pentatricopeptide_repeat | 68 | 92 |
| IPR002885 | Pentatricopeptide_repeat | 168 | 194 |
| IPR002885 | Pentatricopeptide_repeat | 227 | 257 |
| No external refs found! |