1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_26095

Gb_26095


Description : component CPSF73-II of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001402 (Archaeplastida) Phylogenetic Tree(s): OG0001402_tree ,
OG_05_0006222 (LandPlants) Phylogenetic Tree(s): OG_05_0006222_tree ,
OG_06_0005354 (SeedPlants) Phylogenetic Tree(s): OG_06_0005354_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26095
Cluster HCCA: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
Cre02.g080100 No alias Cleavage and polyadenylation specificity factor subunit... 0.02 Archaeplastida
GSVIVT01011657001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.05 Archaeplastida
MA_45580g0010 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Mp2g23780.1 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Pp3c5_16690V3.1 No alias cleavage and polyadenylation specificity factor 73 kDa subunit-II 0.04 Archaeplastida
Solyc04g008030.2.1 No alias component CPSF73-II of Cleavage and Polyadenylation... 0.03 Archaeplastida
Solyc07g049480.3.1 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022712 Beta_Casp 83 201
IPR011108 RMMBL 217 275
No external refs found!