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  5. Gb_26158

Gb_26158


Description : RNA editing factor (OTP82)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26158
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00127120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_02038 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_03579 No alias RNA editing factor (MEF12) 0.06 Archaeplastida
Gb_03691 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 Archaeplastida
Gb_04144 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 Archaeplastida
Gb_04828 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_06576 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_07290 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_08619 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
Gb_08744 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_09702 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_11664 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_14403 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_19828 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_20456 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
Gb_21049 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_21054 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_22477 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Gb_22613 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_23023 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_26155 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_29768 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
Gb_32450 No alias RNA editing factor (CRR21) 0.04 Archaeplastida
Gb_32455 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_32528 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_33070 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_34299 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.1 Archaeplastida
Gb_36433 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
Gb_36636 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_39298 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_39560 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_40680 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.02 Archaeplastida
MA_102449g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_10429069g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_10430355g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_117676g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
MA_138676g0010 No alias RNA editing factor (ECD1) 0.02 Archaeplastida
MA_140591g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_183278g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_28390g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_286190g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_43497g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.09 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_440697g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_472579g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_49629g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_62815g0010 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.1 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_75133g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_8678g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_89214g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_9415113g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_953793g0020 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
Smo109283 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Smo328 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo77659 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Smo79648 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Solyc01g095690.2.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.03 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.03 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 469 491
IPR002885 Pentatricopeptide_repeat 260 289
IPR002885 Pentatricopeptide_repeat 232 259
IPR032867 DYW_dom 668 792
IPR002885 Pentatricopeptide_repeat 79 138
IPR002885 Pentatricopeptide_repeat 393 441
IPR002885 Pentatricopeptide_repeat 158 204
IPR002885 Pentatricopeptide_repeat 293 339
IPR002885 Pentatricopeptide_repeat 495 542
No external refs found!