Gb_26193

Description : tRNA guanosine-methyltransferase (TRM3)

Gene families : OG0003811 (Archaeplastida) Phylogenetic Tree(s): OG0003811_tree ,
OG_05_0008400 (LandPlants) Phylogenetic Tree(s): OG_05_0008400_tree ,
OG_06_0007804 (SeedPlants) Phylogenetic Tree(s): OG_06_0007804_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_26193
Cluster	HCCA: Cluster_289

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g027350	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.01	Archaeplastida
Cre15.g637350	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.02	Archaeplastida
MA_10429620g0010	No alias	tRNA guanosine-methyltransferase (TRM3)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000726	non-recombinational repair	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005672	transcription factor TFIIA complex	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Neighborhood
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Neighborhood
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008175	tRNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	Neighborhood
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
BP	GO:0030488	tRNA methylation	IEP	Neighborhood
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0043527	tRNA methyltransferase complex	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
MF	GO:0052855	ADP-dependent NAD(P)H-hydrate dehydratase activity	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001537	SpoU_MeTrfase	526	667

External Links

No external refs found!

Gb_26193

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation