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  5. AT2G39720

AT2G39720 (RHC2A)


Aliases : RHC2A

Description : RING-H2 finger C2A


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0004757 (LandPlants) Phylogenetic Tree(s): OG_05_0004757_tree ,
OG_06_0002639 (SeedPlants) Phylogenetic Tree(s): OG_06_0002639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G39720
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000950.13 No alias No description available 0.01 Archaeplastida
MA_55505g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_7024054g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e038493_P001 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000268 peroxisome targeting sequence binding IEP Neighborhood
MF GO:0000287 magnesium ion binding IEP Neighborhood
BP GO:0000578 embryonic axis specification IEP Neighborhood
CC GO:0000932 P-body IEP Neighborhood
BP GO:0001933 negative regulation of protein phosphorylation IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0004661 protein geranylgeranyltransferase activity IEP Neighborhood
MF GO:0004662 CAAX-protein geranylgeranyltransferase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005053 peroxisome matrix targeting signal-2 binding IEP Neighborhood
CC GO:0005953 CAAX-protein geranylgeranyltransferase complex IEP Neighborhood
BP GO:0006071 glycerol metabolic process IEP Neighborhood
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Neighborhood
BP GO:0006116 NADH oxidation IEP Neighborhood
BP GO:0006127 glycerophosphate shuttle IEP Neighborhood
BP GO:0006469 negative regulation of protein kinase activity IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006625 protein targeting to peroxisome IEP Neighborhood
BP GO:0006635 fatty acid beta-oxidation IEP Neighborhood
BP GO:0006734 NADH metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009062 fatty acid catabolic process IEP Neighborhood
BP GO:0009642 response to light intensity IEP Neighborhood
BP GO:0009643 photosynthetic acclimation IEP Neighborhood
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009798 axis specification IEP Neighborhood
BP GO:0009880 embryonic pattern specification IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009968 negative regulation of signal transduction IEP Neighborhood
BP GO:0010072 primary shoot apical meristem specification IEP Neighborhood
BP GO:0010351 lithium ion transport IEP Neighborhood
BP GO:0010431 seed maturation IEP Neighborhood
BP GO:0010563 negative regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0010648 negative regulation of cell communication IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015804 neutral amino acid transport IEP Neighborhood
BP GO:0015824 proline transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0015919 peroxisomal membrane transport IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016558 protein import into peroxisome matrix IEP Neighborhood
MF GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
BP GO:0018344 protein geranylgeranylation IEP Neighborhood
BP GO:0019395 fatty acid oxidation IEP Neighborhood
BP GO:0019400 alditol metabolic process IEP Neighborhood
BP GO:0019405 alditol catabolic process IEP Neighborhood
BP GO:0019563 glycerol catabolic process IEP Neighborhood
BP GO:0019674 NAD metabolic process IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0023057 negative regulation of signaling IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0033673 negative regulation of kinase activity IEP Neighborhood
BP GO:0034308 primary alcohol metabolic process IEP Neighborhood
BP GO:0034440 lipid oxidation IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
CC GO:0035770 ribonucleoprotein granule IEP Neighborhood
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Neighborhood
BP GO:0042180 cellular ketone metabolic process IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042326 negative regulation of phosphorylation IEP Neighborhood
BP GO:0042594 response to starvation IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043405 regulation of MAP kinase activity IEP Neighborhood
BP GO:0043407 negative regulation of MAP kinase activity IEP Neighborhood
BP GO:0043408 regulation of MAPK cascade IEP Neighborhood
BP GO:0043409 negative regulation of MAPK cascade IEP Neighborhood
BP GO:0043549 regulation of kinase activity IEP Neighborhood
BP GO:0043574 peroxisomal transport IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044275 cellular carbohydrate catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045859 regulation of protein kinase activity IEP Neighborhood
BP GO:0045936 negative regulation of phosphate metabolic process IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0046982 protein heterodimerization activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0050072 m7G(5')pppN diphosphatase activity IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051348 negative regulation of transferase activity IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0052646 alditol phosphate metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Neighborhood
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP Neighborhood
BP GO:0071985 multivesicular body sorting pathway IEP Neighborhood
BP GO:0072329 monocarboxylic acid catabolic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072662 protein localization to peroxisome IEP Neighborhood
BP GO:0072663 establishment of protein localization to peroxisome IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
MF GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901420 negative regulation of response to alcohol IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
MF GO:1901981 phosphatidylinositol phosphate binding IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
BP GO:1902532 negative regulation of intracellular signal transduction IEP Neighborhood
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Neighborhood
BP GO:1905958 negative regulation of cellular response to alcohol IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR010543 DUF1117 274 389
IPR001841 Znf_RING 200 242
No external refs found!