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  5. Gb_26313

Gb_26313


Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana (sp|q9lfl5|pp390_arath : 543.0)


Gene families : OG0010914 (Archaeplastida) Phylogenetic Tree(s): OG0010914_tree ,
OG_05_0008543 (LandPlants) Phylogenetic Tree(s): OG_05_0008543_tree ,
OG_06_0002335 (SeedPlants) Phylogenetic Tree(s): OG_06_0002335_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26313
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
Gb_23075 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Gb_28758 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_481619g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_491886g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 67 90
IPR002885 Pentatricopeptide_repeat 766 793
IPR002885 Pentatricopeptide_repeat 394 421
IPR002885 Pentatricopeptide_repeat 700 723
IPR002885 Pentatricopeptide_repeat 363 393
IPR002885 Pentatricopeptide_repeat 335 361
IPR002885 Pentatricopeptide_repeat 599 624
IPR032867 DYW_dom 804 863
IPR002885 Pentatricopeptide_repeat 422 470
IPR002885 Pentatricopeptide_repeat 625 673
IPR002885 Pentatricopeptide_repeat 260 306
IPR002885 Pentatricopeptide_repeat 159 206
IPR002885 Pentatricopeptide_repeat 524 571
No external refs found!