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Description : Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana (sp|q94hw2|polr1_arath : 398.0)
Gene families : OG0000390 (Archaeplastida) Phylogenetic Tree(s): OG0000390_tree ,
OG_05_0000129 (LandPlants) Phylogenetic Tree(s): OG_05_0000129_tree ,
OG_06_0000040 (SeedPlants) Phylogenetic Tree(s): OG_06_0000040_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_26646 | |
| Cluster | HCCA: Cluster_105 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_02142 | No alias | Retrovirus-related Pol polyprotein from transposon RE2... | 0.05 | Archaeplastida | |
| Gb_04117 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.05 | Archaeplastida | |
| Gb_04256 | No alias | Retrovirus-related Pol polyprotein from transposon TNT... | 0.05 | Archaeplastida | |
| Gb_06244 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.1 | Archaeplastida | |
| Gb_16945 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.11 | Archaeplastida | |
| Gb_17559 | No alias | Retrovirus-related Pol polyprotein from transposon TNT... | 0.05 | Archaeplastida | |
| Gb_18114 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.27 | Archaeplastida | |
| Gb_18380 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.16 | Archaeplastida | |
| Gb_19756 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.11 | Archaeplastida | |
| Gb_21218 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.16 | Archaeplastida | |
| Gb_23276 | No alias | Retrovirus-related Pol polyprotein from transposon TNT... | 0.05 | Archaeplastida | |
| Gb_24315 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.05 | Archaeplastida | |
| Gb_26530 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.13 | Archaeplastida | |
| Gb_30022 | No alias | Retrovirus-related Pol polyprotein from transposon RE2... | 0.09 | Archaeplastida | |
| Gb_30626 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.05 | Archaeplastida | |
| Gb_31534 | No alias | Retrovirus-related Pol polyprotein from transposon RE2... | 0.05 | Archaeplastida | |
| Gb_31767 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.07 | Archaeplastida | |
| Gb_32814 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.04 | Archaeplastida | |
| Gb_36049 | No alias | Retrovirus-related Pol polyprotein from transposon RE2... | 0.11 | Archaeplastida | |
| Gb_36638 | No alias | Retrovirus-related Pol polyprotein from transposon TNT... | 0.04 | Archaeplastida | |
| Gb_36670 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.12 | Archaeplastida | |
| Gb_39693 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.14 | Archaeplastida | |
| Gb_39735 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.05 | Archaeplastida | |
| Gb_40169 | No alias | Retrovirus-related Pol polyprotein from transposon RE2... | 0.18 | Archaeplastida | |
| Gb_40931 | No alias | Retrovirus-related Pol polyprotein from transposon RE1... | 0.15 | Archaeplastida | |
| Gb_41260 | No alias | Retrovirus-related Pol polyprotein from transposon TNT... | 0.1 | Archaeplastida | |
| Pp3c25_5410V3.1 | No alias | No annotation | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0015074 | DNA integration | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013103 | RVT_2 | 183 | 425 |
| No external refs found! |