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  5. Gb_26665

Gb_26665


Description : Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana (sp|q9ssr4|ppr77_arath : 574.0)


Gene families : OG0010975 (Archaeplastida) Phylogenetic Tree(s): OG0010975_tree ,
OG_05_0010924 (LandPlants) Phylogenetic Tree(s): OG_05_0010924_tree ,
OG_06_0010866 (SeedPlants) Phylogenetic Tree(s): OG_06_0010866_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26665
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00216810 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00104p00122950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52620... 0.06 Archaeplastida
AT1G52620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01017297001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.06 Archaeplastida
LOC_Os11g04295.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.04 Archaeplastida
Solyc03g116560.1.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.04 Archaeplastida
Zm00001e024077_P001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 172 198
IPR002885 Pentatricopeptide_repeat 513 545
IPR002885 Pentatricopeptide_repeat 338 371
IPR002885 Pentatricopeptide_repeat 622 671
IPR002885 Pentatricopeptide_repeat 377 426
IPR002885 Pentatricopeptide_repeat 272 321
IPR002885 Pentatricopeptide_repeat 737 785
IPR002885 Pentatricopeptide_repeat 201 251
IPR002885 Pentatricopeptide_repeat 447 496
IPR002885 Pentatricopeptide_repeat 552 601
No external refs found!