Gb_26917

Description : ligand-gated cation channel (GLR)

Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0000261 (LandPlants) Phylogenetic Tree(s): OG_05_0000261_tree ,
OG_06_0000114 (SeedPlants) Phylogenetic Tree(s): OG_06_0000114_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_26917
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00140120	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
AMTR_s00019p00182190	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
AMTR_s00019p00186040	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
AT2G24710	GLR2.3, ATGLR2.3	glutamate receptor 2.3	0.03	Archaeplastida
AT2G24720	GLR2.2, ATGLR2.2	glutamate receptor 2.2	0.04	Archaeplastida
AT3G51480	GLR3.6, ATGLR3.6	glutamate receptor 3.6	0.03	Archaeplastida
AT5G11180	ATGLR2.6, GLR2.6	glutamate receptor 2.6	0.03	Archaeplastida
AT5G27100	GLR2.1, ATGLR2.1	glutamate receptor 2.1	0.03	Archaeplastida
GSVIVT01021159001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.06	Archaeplastida
GSVIVT01033121001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.09	Archaeplastida
GSVIVT01033137001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033150001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
GSVIVT01033156001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.05	Archaeplastida
GSVIVT01033160001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
Gb_06329	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida
Gb_16131	No alias	ligand-gated cation channel (GLR)	0.06	Archaeplastida
Gb_28362	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
LOC_Os09g26144.1	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_101552g0010	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida
MA_32301g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_46902g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Solyc04g078860.4.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	Interproscan
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Neighborhood
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001828	ANF_lig-bd_rcpt	44	402
IPR001638	Solute-binding_3/MltF_N	474	803
IPR001320	Iontro_rcpt	804	834

External Links

No external refs found!

Gb_26917

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation