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  5. Gb_27163

Gb_27163


Description : Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana (sp|q9fkr3|pp404_arath : 512.0)


Gene families : OG0008885 (Archaeplastida) Phylogenetic Tree(s): OG0008885_tree ,
OG_05_0009763 (LandPlants) Phylogenetic Tree(s): OG_05_0009763_tree ,
OG_06_0005429 (SeedPlants) Phylogenetic Tree(s): OG_06_0005429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27163
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00059700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g38730... 0.02 Archaeplastida
AMTR_s00171p00059960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g38730... 0.05 Archaeplastida
AT5G38730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Archaeplastida
GSVIVT01018126001 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.03 Archaeplastida
Solyc04g050550.3.1 No alias Pentatricopeptide repeat-containing protein At5g38730... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 558 600
IPR002885 Pentatricopeptide_repeat 381 430
IPR002885 Pentatricopeptide_repeat 243 292
IPR002885 Pentatricopeptide_repeat 212 241
IPR002885 Pentatricopeptide_repeat 177 206
IPR002885 Pentatricopeptide_repeat 448 479
IPR002885 Pentatricopeptide_repeat 309 342
IPR002885 Pentatricopeptide_repeat 344 374
IPR002885 Pentatricopeptide_repeat 518 549
No external refs found!