Gb_27225

Description : pectin methylesterase

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0007936 (SeedPlants) Phylogenetic Tree(s): OG_06_0007936_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_27225
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00027p00247950	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00028p00077900	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00106p00092510	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00116p00025230	evm_27.TU.AmTr_v1...	Probable pectinesterase 8 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G05310	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT3G29090	PME31, ATPME31	pectin methylesterase 31	0.02	Archaeplastida
AT5G47500	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
GSVIVT01013832001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01015852001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
GSVIVT01023786001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01031250001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
GSVIVT01034985001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Gb_17798	No alias	pectin methylesterase	0.05	Archaeplastida
LOC_Os05g44600.1	No alias	pectin methylesterase	0.02	Archaeplastida
MA_19196g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_304854g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_66089g0010	No alias	pectin methylesterase	0.04	Archaeplastida
Mp2g19430.1	No alias	pectin methylesterase	0.06	Archaeplastida
Mp3g01170.1	No alias	pectin methylesterase	0.02	Archaeplastida
Mp5g03920.1	No alias	pectin methylesterase	0.04	Archaeplastida
Mp5g03930.1	No alias	pectin methylesterase	0.04	Archaeplastida
Pp3c10_18650V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c10_20120V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c12_23790V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c12_24000V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c18_13190V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c1_6010V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c25_760V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c3_30560V3.1	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
Pp3c3_35217V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c3_35240V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c5_23400V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c8_2010V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Smo81583	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Solyc04g080530.3.1	No alias	pectin methylesterase	0.05	Archaeplastida
Solyc08g078640.3.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc09g091730.4.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc10g083820.2.1	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0019104	DNA N-glycosylase activity	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	56	348

External Links

No external refs found!

Gb_27225

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation