Gb_27291


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 634.0)


Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0060460 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0053708 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27291
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
Gb_11039 No alias RNA editing factor (CRR21) 0.06 Archaeplastida
Gb_16072 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_21016 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_38897 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_129805g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.07 Archaeplastida
MA_130999g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_137736g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_820066g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 578 602
IPR002885 Pentatricopeptide_repeat 647 672
IPR002885 Pentatricopeptide_repeat 478 501
IPR032867 DYW_dom 677 801
IPR002885 Pentatricopeptide_repeat 239 267
IPR002885 Pentatricopeptide_repeat 371 399
IPR002885 Pentatricopeptide_repeat 503 550
IPR002885 Pentatricopeptide_repeat 139 186
IPR002885 Pentatricopeptide_repeat 403 450
IPR002885 Pentatricopeptide_repeat 270 318
IPR002885 Pentatricopeptide_repeat 197 238
No external refs found!