Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 634.0)
Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0060460 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0053708 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Gb_27291 | |
Cluster | HCCA: Cluster_241 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Gb_11039 | No alias | RNA editing factor (CRR21) | 0.06 | Archaeplastida | |
Gb_16072 | No alias | RNA editing factor (OTP82) | 0.04 | Archaeplastida | |
Gb_21016 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.07 | Archaeplastida | |
Gb_38897 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.05 | Archaeplastida | |
MA_129805g0010 | No alias | Pentatricopeptide repeat-containing protein At4g39530... | 0.07 | Archaeplastida | |
MA_130999g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.06 | Archaeplastida | |
MA_137736g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.06 | Archaeplastida | |
MA_820066g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.07 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003747 | translation release factor activity | IEP | Neighborhood |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
BP | GO:0006260 | DNA replication | IEP | Neighborhood |
BP | GO:0006415 | translational termination | IEP | Neighborhood |
MF | GO:0008079 | translation termination factor activity | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Neighborhood |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Neighborhood |
BP | GO:0022411 | cellular component disassembly | IEP | Neighborhood |
BP | GO:0032984 | protein-containing complex disassembly | IEP | Neighborhood |
MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
BP | GO:0043624 | cellular protein complex disassembly | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 578 | 602 |
IPR002885 | Pentatricopeptide_repeat | 647 | 672 |
IPR002885 | Pentatricopeptide_repeat | 478 | 501 |
IPR032867 | DYW_dom | 677 | 801 |
IPR002885 | Pentatricopeptide_repeat | 239 | 267 |
IPR002885 | Pentatricopeptide_repeat | 371 | 399 |
IPR002885 | Pentatricopeptide_repeat | 503 | 550 |
IPR002885 | Pentatricopeptide_repeat | 139 | 186 |
IPR002885 | Pentatricopeptide_repeat | 403 | 450 |
IPR002885 | Pentatricopeptide_repeat | 270 | 318 |
IPR002885 | Pentatricopeptide_repeat | 197 | 238 |
No external refs found! |