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  5. AT2G40650

AT2G40650


Description : PRP38 family protein


Gene families : OG0004992 (Archaeplastida) Phylogenetic Tree(s): OG0004992_tree ,
OG_05_0005450 (LandPlants) Phylogenetic Tree(s): OG_05_0005450_tree ,
OG_06_0005471 (SeedPlants) Phylogenetic Tree(s): OG_06_0005471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G40650
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.24 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os09g01630.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_214707g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g12850.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc01g100060.4.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Zm00001e009450_P001 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006396 RNA processing ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0002240 response to molecule of oomycetes origin IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005654 nucleoplasm IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0080050 regulation of seed development IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:2000034 regulation of seed maturation IEP Neighborhood
BP GO:2000693 positive regulation of seed maturation IEP Neighborhood
InterPro domains Description Start Stop
IPR024767 PRP38_C 179 269
IPR005037 PRP38 10 174
No external refs found!