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  5. Gb_27459

Gb_27459


Description : Pentatricopeptide repeat-containing protein At1g71210, mitochondrial OS=Arabidopsis thaliana (sp|q8gza6|pp113_arath : 441.0)


Gene families : OG0006096 (Archaeplastida) Phylogenetic Tree(s): OG0006096_tree ,
OG_05_0004418 (LandPlants) Phylogenetic Tree(s): OG_05_0004418_tree ,
OG_06_0003203 (SeedPlants) Phylogenetic Tree(s): OG_06_0003203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27459
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
MA_236797g0010 No alias Pentatricopeptide repeat-containing protein At1g71210,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 524 569
IPR002885 Pentatricopeptide_repeat 590 638
IPR002885 Pentatricopeptide_repeat 730 777
IPR002885 Pentatricopeptide_repeat 800 848
IPR002885 Pentatricopeptide_repeat 381 430
IPR002885 Pentatricopeptide_repeat 283 309
IPR002885 Pentatricopeptide_repeat 702 726
IPR002885 Pentatricopeptide_repeat 455 476
IPR002885 Pentatricopeptide_repeat 350 378
IPR002885 Pentatricopeptide_repeat 664 692
IPR002885 Pentatricopeptide_repeat 246 268
IPR002885 Pentatricopeptide_repeat 177 204
No external refs found!