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  5. AT2G40770

AT2G40770


Description : zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding


Gene families : OG0003769 (Archaeplastida) Phylogenetic Tree(s): OG0003769_tree ,
OG_05_0004922 (LandPlants) Phylogenetic Tree(s): OG_05_0004922_tree ,
OG_06_0003886 (SeedPlants) Phylogenetic Tree(s): OG_06_0003886_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G40770
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Gb_37830 No alias chromatin remodeling factor (SHPRH) 0.03 Archaeplastida
MA_10429306g0010 No alias chromatin remodeling factor (SHPRH) 0.02 Archaeplastida
Smo438275 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Solyc03g095690.3.1 No alias chromatin remodeling factor (SHPRH) 0.01 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity IEP Neighborhood
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Neighborhood
MF GO:0004835 tubulin-tyrosine ligase activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005635 nuclear envelope IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006011 UDP-glucose metabolic process IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
CC GO:0008278 cohesin complex IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
BP GO:0010032 meiotic chromosome condensation IEP Neighborhood
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP Neighborhood
MF GO:0010428 methyl-CpNpG binding IEP Neighborhood
MF GO:0010429 methyl-CpNpN binding IEP Neighborhood
MF GO:0010491 UTP:arabinose-1-phosphate uridylyltransferase activity IEP Neighborhood
BP GO:0010528 regulation of transposition IEP Neighborhood
BP GO:0010529 negative regulation of transposition IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Neighborhood
MF GO:0017103 UTP:galactose-1-phosphate uridylyltransferase activity IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
BP GO:0031935 regulation of chromatin silencing IEP Neighborhood
BP GO:0031937 positive regulation of chromatin silencing IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0032776 DNA methylation on cytosine IEP Neighborhood
BP GO:0033233 regulation of protein sumoylation IEP Neighborhood
BP GO:0033234 negative regulation of protein sumoylation IEP Neighborhood
BP GO:0033356 UDP-L-arabinose metabolic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0035197 siRNA binding IEP Neighborhood
BP GO:0046398 UDP-glucuronate metabolic process IEP Neighborhood
MF GO:0047338 UTP:xylose-1-phosphate uridylyltransferase activity IEP Neighborhood
MF GO:0047350 glucuronate-1-phosphate uridylyltransferase activity IEP Neighborhood
BP GO:0048443 stamen development IEP Neighborhood
BP GO:0048444 floral organ morphogenesis IEP Neighborhood
BP GO:0048481 plant ovule development IEP Neighborhood
BP GO:0051054 positive regulation of DNA metabolic process IEP Neighborhood
BP GO:0051177 meiotic sister chromatid cohesion IEP Neighborhood
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP Neighborhood
BP GO:0051455 attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation IEP Neighborhood
MF GO:0051748 UTP-monosaccharide-1-phosphate uridylyltransferase activity IEP Neighborhood
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP Neighborhood
BP GO:0052573 UDP-D-galactose metabolic process IEP Neighborhood
BP GO:0060341 regulation of cellular localization IEP Neighborhood
BP GO:0060968 regulation of gene silencing IEP Neighborhood
MF GO:0061980 regulatory RNA binding IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
BP GO:0070601 centromeric sister chromatid cohesion IEP Neighborhood
BP GO:0080154 regulation of fertilization IEP Neighborhood
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:0080188 RNA-directed DNA methylation IEP Neighborhood
BP GO:0090308 regulation of methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0090309 positive regulation of methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0090697 post-embryonic plant organ morphogenesis IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:1903827 regulation of cellular protein localization IEP Neighborhood
BP GO:1905269 positive regulation of chromatin organization IEP Neighborhood
BP GO:2000008 regulation of protein localization to cell surface IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 291 783
IPR001650 Helicase_C 1434 1557
No external refs found!